Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2388 ATGGCTTTTCTAGAGGTAAAACAGAAACTCCTAAACGAGATCGAAGCTTTAGGATTTCCAAGGGCCCGAGTTGTCCGAGCACTTCATAATACCGGAAATGTCAACTCTGAAGTTGCAATAAATTGGATCATTGATCATGACAATGATCCAGATATAGATCAAATGCCCCTGGTAGCAATAGACATTGATATTGAATCTCCTGAACCATTTCATAACACAGAGGAAATGAAGAGGAAAGCTAGTGAACTAAGCGATCAAATACGGAAAGGAAAGGAGAAAGAAGAAAAGGAATTAGAAAGAAAAAGGGAGAAGGATAGAATTCGTTCTGGTAAAGAACTGCAAGAAGCAAAAAGAATTGCAGAAGAAACTGAAAGGAAACGCTATATAGATGCTAGGCAAGCTGAGAAACAGGAGGAGAAAAGAGCAAGAGAGAAAGTTTTACAAAAGCTTGAACAAGACAAGATAGAAAGAAAAAGGAATCTTGGAATGCCCTCTGAAAGGTCTGAAAGCCTTGCTACAAAAGCTACCACAACCGGAGCAGGGGAAAAGGATGAACTTAGATCACAGAATTCACTGCCAGCAACTTCAGTTAGTAAAGCAGTCTCTATGAGAGAATGTTTAAGGTCTCTTAGGCATCATCAAAAGGATGATTCTGACAAAGTGAGAAATGCCTTCCAAACCCTCTTCATCTATGTCAGAAATGTAGCAAGAAATCCTGATGAGGAAAAGTTTAGGAAGATTCGACTCAGTAATCCTTTGTTCCAGGAAAGAGTTGGGAATTTGAAAGGAGGGATCGAGTTTCTCGAGCATTGTGGCTTTCAGAGAGAAGGAGGCTTTCTGTACCTTCCCCGTGATAAAGTCGACCTGGGAGTTTTAGTCACTGCTGGATCACTGTTGGAATCTGCATTGACAAATCCCTTTTTTGGTGTTCTATAA 936 40.28 MAFLEVKQKLLNEIEALGFPRARVVRALHNTGNVNSEVAINWIIDHDNDPDIDQMPLVAIDIDIESPEPFHNTEEMKRKASELSDQIRKGKEKEEKELERKREKDRIRSGKELQEAKRIAEETERKRYIDARQAEKQEEKRAREKVLQKLEQDKIERKRNLGMPSERSESLATKATTTGAGEKDELRSQNSLPATSVSKAVSMRECLRSLRHHQKDDSDKVRNAFQTLFIYVRNVARNPDEEKFRKIRLSNPLFQERVGNLKGGIEFLEHCGFQREGGFLYLPRDKVDLGVLVTAGSLLESALTNPFFGVL 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 41569942 41574411 - Lag0006357.1 Lac6g2388 612157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2388 311 MobiDBLite consensus disorder prediction 150 197 - -
Lac6g2388 311 Pfam UBA-like domain 8 54 IPR015940 -
Lac6g2388 311 Gene3D - 8 53 - -
Lac6g2388 311 MobiDBLite consensus disorder prediction 150 164 - -
Lac6g2388 311 CDD UBA_PUB_plant 5 53 - -
Lac6g2388 311 MobiDBLite consensus disorder prediction 69 110 - -
Lac6g2388 311 SUPERFAMILY PUG domain-like 210 307 IPR036339 -
Lac6g2388 311 SUPERFAMILY UBA-like 5 56 IPR009060 GO:0005515(InterPro)
Lac6g2388 311 MobiDBLite consensus disorder prediction 166 197 - -
Lac6g2388 311 Gene3D - 196 301 - -
Lac6g2388 311 Coils Coil 73 108 - -
Lac6g2388 311 SMART PGNneu 223 284 - -
Lac6g2388 311 Coils Coil 133 156 - -
Lac6g2388 311 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 46 IPR015940 -
Lac6g2388 311 PANTHER F13M7.16 PROTEIN 1 311 - -
Lac6g2388 311 Pfam PUB domain 219 288 IPR018997 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2039 Lac-Chr12:37449685 Lac6g2388 Lac-Chr6:41569942 2.00E-63 dispersed
Lac6g2388 Lac-Chr6:41569942 Lac8g1599 Lac-Chr8:33801780 4.00E-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2388 K24348 - csv:101210384 477.633