Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac6g2388 | ATGGCTTTTCTAGAGGTAAAACAGAAACTCCTAAACGAGATCGAAGCTTTAGGATTTCCAAGGGCCCGAGTTGTCCGAGCACTTCATAATACCGGAAATGTCAACTCTGAAGTTGCAATAAATTGGATCATTGATCATGACAATGATCCAGATATAGATCAAATGCCCCTGGTAGCAATAGACATTGATATTGAATCTCCTGAACCATTTCATAACACAGAGGAAATGAAGAGGAAAGCTAGTGAACTAAGCGATCAAATACGGAAAGGAAAGGAGAAAGAAGAAAAGGAATTAGAAAGAAAAAGGGAGAAGGATAGAATTCGTTCTGGTAAAGAACTGCAAGAAGCAAAAAGAATTGCAGAAGAAACTGAAAGGAAACGCTATATAGATGCTAGGCAAGCTGAGAAACAGGAGGAGAAAAGAGCAAGAGAGAAAGTTTTACAAAAGCTTGAACAAGACAAGATAGAAAGAAAAAGGAATCTTGGAATGCCCTCTGAAAGGTCTGAAAGCCTTGCTACAAAAGCTACCACAACCGGAGCAGGGGAAAAGGATGAACTTAGATCACAGAATTCACTGCCAGCAACTTCAGTTAGTAAAGCAGTCTCTATGAGAGAATGTTTAAGGTCTCTTAGGCATCATCAAAAGGATGATTCTGACAAAGTGAGAAATGCCTTCCAAACCCTCTTCATCTATGTCAGAAATGTAGCAAGAAATCCTGATGAGGAAAAGTTTAGGAAGATTCGACTCAGTAATCCTTTGTTCCAGGAAAGAGTTGGGAATTTGAAAGGAGGGATCGAGTTTCTCGAGCATTGTGGCTTTCAGAGAGAAGGAGGCTTTCTGTACCTTCCCCGTGATAAAGTCGACCTGGGAGTTTTAGTCACTGCTGGATCACTGTTGGAATCTGCATTGACAAATCCCTTTTTTGGTGTTCTATAA | 936 | 40.28 | MAFLEVKQKLLNEIEALGFPRARVVRALHNTGNVNSEVAINWIIDHDNDPDIDQMPLVAIDIDIESPEPFHNTEEMKRKASELSDQIRKGKEKEEKELERKREKDRIRSGKELQEAKRIAEETERKRYIDARQAEKQEEKRAREKVLQKLEQDKIERKRNLGMPSERSESLATKATTTGAGEKDELRSQNSLPATSVSKAVSMRECLRSLRHHQKDDSDKVRNAFQTLFIYVRNVARNPDEEKFRKIRLSNPLFQERVGNLKGGIEFLEHCGFQREGGFLYLPRDKVDLGVLVTAGSLLESALTNPFFGVL | 311 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 41569942 | 41574411 | - | Lag0006357.1 | Lac6g2388 | 612157 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac6g2388 | 311 | MobiDBLite | consensus disorder prediction | 150 | 197 | - | - | |
Lac6g2388 | 311 | Pfam | UBA-like domain | 8 | 54 | IPR015940 | - | |
Lac6g2388 | 311 | Gene3D | - | 8 | 53 | - | - | |
Lac6g2388 | 311 | MobiDBLite | consensus disorder prediction | 150 | 164 | - | - | |
Lac6g2388 | 311 | CDD | UBA_PUB_plant | 5 | 53 | - | - | |
Lac6g2388 | 311 | MobiDBLite | consensus disorder prediction | 69 | 110 | - | - | |
Lac6g2388 | 311 | SUPERFAMILY | PUG domain-like | 210 | 307 | IPR036339 | - | |
Lac6g2388 | 311 | SUPERFAMILY | UBA-like | 5 | 56 | IPR009060 | GO:0005515(InterPro) | |
Lac6g2388 | 311 | MobiDBLite | consensus disorder prediction | 166 | 197 | - | - | |
Lac6g2388 | 311 | Gene3D | - | 196 | 301 | - | - | |
Lac6g2388 | 311 | Coils | Coil | 73 | 108 | - | - | |
Lac6g2388 | 311 | SMART | PGNneu | 223 | 284 | - | - | |
Lac6g2388 | 311 | Coils | Coil | 133 | 156 | - | - | |
Lac6g2388 | 311 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 5 | 46 | IPR015940 | - | |
Lac6g2388 | 311 | PANTHER | F13M7.16 PROTEIN | 1 | 311 | - | - | |
Lac6g2388 | 311 | Pfam | PUB domain | 219 | 288 | IPR018997 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac12g2039 | Lac-Chr12:37449685 | Lac6g2388 | Lac-Chr6:41569942 | 2.00E-63 | dispersed | |
Lac6g2388 | Lac-Chr6:41569942 | Lac8g1599 | Lac-Chr8:33801780 | 4.00E-08 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac6g2388 | K24348 | - | csv:101210384 | 477.633 |