Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2400 ATGGATCCCCAACTAATCAACGGCCACGATTTCATCTTCCGATCAAAACTCCCCGACATTTACATCCCAAACCATCTCCCTCTCCACACCTACTGCTTCGAACGCCTCTCCCAATTCCACGACCGCCCCTGCCTGATCAACGGCGCCACGGGCGAGGTCCACACCTACGCCGCCGTGGACCAGGCGGCGCGCCGGGTGGCCGCTGGGCTGAGCAAGATCGGCGTCGGACAAGGCGACGTGATCATGCTTCTGCTGCAGAACAGCCCGGAGTTCGTGTTCGCGTTCCTCGGCGCGTCGTACGGCGGCGCCATTGCGACGACGGCGAACCCGTTGTACAAGCCGGCGGAGATCGCGAAGCAGGCGGCGGCGGCGAGGGCGAAGGTGATCGTTACGCAGGCGGAGTTCGTGGAGAAGGTTCGGGGATTTGCGGAGGAACATGGGGTGAAGATTGTGTGTACGGACTCGGCGGCGGCGGCGGGTTGCTTGAGATTCTCGGAGGTTTTGGAGGCGGATGAGAGTGAGATTCCGGCGGTGAAGATTAATTCGAATGACGTTGTGGCGCTGCCGTTCTCGTCTGGAACTACTGGAGTTCCTAAAGGGGTTATGCTTACGCATAAATCTCTTGTCACAAGCGTTGCTCAGCAGGTGGACGGAGAGAATCCAAATCTAAACTTGAAGAGCAAGGACGTAATAATATGTGTTCTTCCTCTGTTCCACATCTACTCTCTCAACTCCGTTCTCCTCTGCGGACTACGTGTCGGCGCCGCCATTCTCATCCTCAAAAAATACGACATGTCGTCTTTGCTCCCCCTCATTCAAACCCACAAGGCCACCATAGCCCCCTTCGTCCCTCCCATCGTCCTCGACTTCGCCAACAATCCCCACCTCCACCGTTACGACTTGTCGTCCATCAGAATCGTCATGTCGGGCGCCGCCCCCATGGCCAAGGACCTCGAGGACGCCGTCAAGGCCAAGCTCCCCAATGCCAACCTCGGACAGGGGTATGGAATGACGGAGGCAGGGCCAGTGCTGTCCATGTGTTTGGGGTTTGCTAAGGAACCTTTTGAGGTGAAATCAGGTGCATGCGGGACCGTCGTAAGAAATGCTGAGATGAAGATCATCCACCCTGAAACTGGTGCCTCTTTGCCACGTAATCACCCTGGCGAGATCTGCATACGTGGCTCCCAGATCATGAAAGGCAAGTCCCACCCCGAGAAAATTTCTAGTACTACGGTAGTATGGAAAATTTTCCATACTACCTCCATTTATTGTTTGCCATGTAAGGAGTAA 1290 55.97 MDPQLINGHDFIFRSKLPDIYIPNHLPLHTYCFERLSQFHDRPCLINGATGEVHTYAAVDQAARRVAAGLSKIGVGQGDVIMLLLQNSPEFVFAFLGASYGGAIATTANPLYKPAEIAKQAAAARAKVIVTQAEFVEKVRGFAEEHGVKIVCTDSAAAAGCLRFSEVLEADESEIPAVKINSNDVVALPFSSGTTGVPKGVMLTHKSLVTSVAQQVDGENPNLNLKSKDVIICVLPLFHIYSLNSVLLCGLRVGAAILILKKYDMSSLLPLIQTHKATIAPFVPPIVLDFANNPHLHRYDLSSIRIVMSGAAPMAKDLEDAVKAKLPNANLGQGYGMTEAGPVLSMCLGFAKEPFEVKSGACGTVVRNAEMKIIHPETGASLPRNHPGEICIRGSQIMKGKSHPEKISSTTVVWKIFHTTSIYCLPCKE 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 41674924 41680938 - Lag0006369.1 Lac6g2400 612169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2400 429 Gene3D - 5 416 IPR042099 -
Lac6g2400 429 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 420 - -
Lac6g2400 429 ProSitePatterns Putative AMP-binding domain signature. 188 199 IPR020845 -
Lac6g2400 429 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 10 405 - GO:0016405(PANTHER)
Lac6g2400 429 SUPERFAMILY Acetyl-CoA synthetase-like 12 400 - -
Lac6g2400 429 Pfam AMP-binding enzyme 34 400 IPR000873 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g2400 Lac-Chr6:41674924 Lac9g1420 Lac-Chr9:32082077 1.60E-127 dispersed
Lac6g2400 Lac-Chr6:41674924 Lac3g0310 Lac-Chr3:2202850 3.60E-148 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2400 K01904 - csv:101210868 670.618