Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2421 ATGTCACCCATTAATTTCAGAGCATTGAGGCGCCATAGTTTAGCAAAAAAAAAAAGAAAAAACGACATGGGTTTGGTTGAAGAATACTTGCCAGTAATGGCAATGTTTGGACTTCAAGTGATTTACGCCGTTATGACTCTTCTCTCCCGGGCTGCCCTCTTGAAGGGCATGAGCCCTAGAGTGTTCGTTGTTTACAGGCAGGCCATTGCCACTCTCTTTATTGCACCCATTGCTTATTTTTCCAGGTCGAAATCCACGAGAATATCTTTGGATTTGAAGAGTTTTTCTCTGATCTTCCTTTCTGCTCTTGTCGGTGCAACGTTCAACCACAATTTGTACTTTGAGGGAGTTTTCTTAGCCAACACATCGACATCAACCGCCTTGTCGAATTTGATTCCAGCGGTCACATTTGTGATAGCAACAATTGTTGGACTTGAGAGTGTGGAGATGAGAAGCTTGAGGAGCATGGCTAAGATTGGAGGGACAATTATTTGTGTGTGTGGGGCTATGTGCATGGCTCTTCTAAGGGGTCCAAAGCTTCTCAATGTCACACAAGATTTTGGGGTGAAATCTACAATATTTGGTGTGGAAAGTGGAAGTGATGAGGCTTGGTTATTGGGTTGCTTGTGTCTCTTTGGGGACAGTTGTTGCTGGTCAATTTGGTTGATTTTGCAGGTACCAGCAATAGCAAGATATCCTGACAAGCTATCTTTATCAGCATGGATGTGTTTCTTTTCATTGATACAATCAAGCCTTTTCACTCTATTGGTAGAGCCAACCAATCTTCAAACATGGAAAATCCATTCAAGTATTGGAGTTATTTGTTGCCTCTTCTCAGGAATTTTTGGCTCAGGTGTTGCCTACTTTCTTCAAGCTTGGGGTATTTCAAAACGAGGCCCTGTCTTCTCTGCAGTGTTCAACCCTCTTTGTACCATTATTACAACTATTTTGGCAGCTATATTTCTTCATGAGAAGATTTATACCGGAAGCTTATTGGGGGGCTTGGCTGTAATTATTGGATTGTACATAGTTCTTTGGGGAAAAGCAAATGATTATGTGAAGGAAGAAGGCACAAAAAAGCAATGTGTTGAAAAAGAAGAAGAGGATTGTGAAACAGCTTCAGCTGAGACAGATGATCTGGAGGAACCCCTTTTGTCTAAAGAATGTAAGCTAGGCAAATGA 1182 41.62 MSPINFRALRRHSLAKKKRKNDMGLVEEYLPVMAMFGLQVIYAVMTLLSRAALLKGMSPRVFVVYRQAIATLFIAPIAYFSRSKSTRISLDLKSFSLIFLSALVGATFNHNLYFEGVFLANTSTSTALSNLIPAVTFVIATIVGLESVEMRSLRSMAKIGGTIICVCGAMCMALLRGPKLLNVTQDFGVKSTIFGVESGSDEAWLLGCLCLFGDSCCWSIWLILQVPAIARYPDKLSLSAWMCFFSLIQSSLFTLLVEPTNLQTWKIHSSIGVICCLFSGIFGSGVAYFLQAWGISKRGPVFSAVFNPLCTIITTILAAIFLHEKIYTGSLLGGLAVIIGLYIVLWGKANDYVKEEGTKKQCVEKEEEDCETASAETDDLEEPLLSKECKLGK 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 41963551 41966497 - Lag0006390.1 Lac6g2421 612190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2421 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 65 174 - -
Lac6g2421 393 PANTHER WAT1-RELATED PROTEIN 33 364 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Lac6g2421 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 242 348 - -
Lac6g2421 393 Pfam EamA-like transporter family 32 153 IPR000620 GO:0016020(InterPro)
Lac6g2421 393 Pfam EamA-like transporter family 206 345 IPR000620 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g2421 Lac-Chr6:41963551 Lac6g2427 Lac-Chr6:42024535 5.40E-159 dispersed
Lac6g2421 Lac-Chr6:41963551 Lac6g2422 Lac-Chr6:41974620 6.50E-48 tandem
Lac3g0256 Lac-Chr3:1817438 Lac6g2421 Lac-Chr6:41963551 1.50E-93 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2421 - - - 0.0