Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2427 ATGGGTTTGATTGAAGAATACTTGCCAGCAATGGCGATGTTTGGGCTTCAAGTGACCTACGCCATTATGGCTCTCATCTCCCGGGCTGCCCTCTTGAAGGGCATGAGCCCTAGAGTGTTTGTTGTTTACAGGCAGGGCATTGCCACTCTCTTCATTGCACCCATTGCTTATTTTTCCAGGTCGAAATCCAGGAGGGTGTCTTTGGACTTGAAGAGCTTTTCTCTGATCTTCCTTGCTGCTCTTGTCGGTGCAACGATGAACCAAAATGTTTACTTTGAGGGAGTTTTCTTAGCTAGCTCGTCAATGGCGACTGCGATGACCAATCTGATTCCCGCAGTGACGTTTGTGATAGCGGCAACTGTCGGAATGGAGAGTTTGAAGATGAGAAGCTTGAGGAGTTTGGCAAAGATAGGAGGGACAGTGGTTTGTGTGGGTGGGGCCATGTGCATGGCCTTTCTGAGGGGTCCAAAGCTTCTGAATGGGACACAAGGTTTTGGGGTGAAATCTGTGATATTTGGTGTGGAAAATGGAAGTGATGAGGCTTGGTTATTGGGTTGCTTGTGTCTCTTTGGGAGCTGTTGTTGCTGGTCAATTTGGTTGATTTTGCAGGTACCAGCTTCAGCAAGCTATCCAGACAATCTATCTTTATCAGCATGGATGTGTCTGTTTGCCACAATTCAATCAGCAATTGTTACTCTATTGGTAGAACCAATCACTATAGAAACATGGAGAATTCATTCAAATATTGAACTCATTTGTTACCTCTTCTCAGGAATTGTTGGCTCAGGAGTTGCCTTCTTTGTTCAAGCTTGGTGTGTTTCAAAAAGGGGCCCTGTCTTCTCTGCAATGTTCAACCCTCTTTGCACCATTGTTACAACTATTTTGGCTGCTATATTTCTTCATGAGGAGATGTATACTGGAAGCTTGTTGGGGGGCTTGGCTGTAATTATTGGATTGTACATTGTTCTTTGGGGAAAAGCAAATGATTATGTGAAGGAAGAAGGCAAAGAAAAGCGTAGTGTTGAAACACAAGAAGAGGGTAATGAATCAGCTTCAGTTGAGACAAACAGCTGTAAAATTGATTTGAAGGAACCCCTCTTGTCTAAAGAATGTATTGACAACTAG 1125 43.91 MGLIEEYLPAMAMFGLQVTYAIMALISRAALLKGMSPRVFVVYRQGIATLFIAPIAYFSRSKSRRVSLDLKSFSLIFLAALVGATMNQNVYFEGVFLASSSMATAMTNLIPAVTFVIAATVGMESLKMRSLRSLAKIGGTVVCVGGAMCMAFLRGPKLLNGTQGFGVKSVIFGVENGSDEAWLLGCLCLFGSCCCWSIWLILQVPASASYPDNLSLSAWMCLFATIQSAIVTLLVEPITIETWRIHSNIELICYLFSGIVGSGVAFFVQAWCVSKRGPVFSAMFNPLCTIVTTILAAIFLHEEMYTGSLLGGLAVIIGLYIVLWGKANDYVKEEGKEKRSVETQEEGNESASVETNSCKIDLKEPLLSKECIDN 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42024535 42027950 - Lag0006396.1 Lac6g2427 612196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2427 374 MobiDBLite consensus disorder prediction 336 356 - -
Lac6g2427 374 SUPERFAMILY Multidrug resistance efflux transporter EmrE 220 326 - -
Lac6g2427 374 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 151 - -
Lac6g2427 374 Pfam EamA-like transporter family 12 131 IPR000620 GO:0016020(InterPro)
Lac6g2427 374 Pfam EamA-like transporter family 184 323 IPR000620 GO:0016020(InterPro)
Lac6g2427 374 PANTHER WAT1-RELATED PROTEIN 11 341 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0256 Lac-Chr3:1817438 Lac6g2427 Lac-Chr6:42024535 7.80E-95 dispersed
Lac6g2421 Lac-Chr6:41963551 Lac6g2427 Lac-Chr6:42024535 5.40E-159 dispersed
Lac6g2422 Lac-Chr6:41974620 Lac6g2427 Lac-Chr6:42024535 1.30E-40 dispersed
Lac6g2423 Lac-Chr6:41979676 Lac6g2427 Lac-Chr6:42024535 3.50E-67 dispersed
Lac6g2427 Lac-Chr6:42024535 Lac9g0310 Lac-Chr9:4958882 2.60E-54 dispersed
Lac6g2424 Lac-Chr6:41984277 Lac6g2427 Lac-Chr6:42024535 8.10E-151 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2427 - - - 0.0