Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2474 ATGTTTGATTGTGGTTACAAGTCACAACTGATGGGTGGTCAACGAGAAAAGTTCGTGAGGTTGGATGACTTGGACTCTAGATTGTCATCCCCATCAGATAGTGGAATGAGAAGATGTGGTTTTAATATAGATGGATTTAACCGTGCAGTCCATGGAAGTGATAAGCCATCTGGATCCTTTAAGAGAGGAATGAGAAAAGGGTCTGAAGGACTTAAATCAATCGGCCGATCACTCAAGTTTGGGGTTTCTCGAGCTGTATTTCCAGAGGATCTTAAAGAGTCAAAGAAGAAGATCTTTGATCCTCAAGACAAGTTGCTCTTATTTTTGAATAAACTTTTTGTCATATCATGTATTTTGGCAATATCTGTGGACCCACTATTCTTTTATGTTCCTGTCATTAACCAAAACTCAAACTGTCTTGGCATTGATAGAAAGCTGGCAATTACAGTGACAACATTGCGGACAATTATTGATGTTTTCTATCTTATTCATATGGCTCTCCAATTCCGGACAGCTTATATTGCTCCATCATCTCGGGTGTTTGGGAGAGGTGAACTTGTGATTGATCCTGCACAAATAGCAAAGCGATACTTGCGGCGGTATTTCATCATTGATTTGGTGTCTGTGCTGCCTCTTCCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCAGATGTATATGTGACTAAGCAGGCCCTTCTTTTAATTGTATTCCTTCAATATATCCCAAGATTTCTTAGAGCGTTTCCATTGGCTTCAGAATTGAAAAGGACAACAGGCGTATTTGCAGAAACTGCTTGGGCAGGTGCTGCATATTATTTGCTATTATATATGCTTGCAAGTCATATAGTTGGAGCACTATGGTACTTATTGGCTGTGGAACGCAATGATTCATGTTGGCAGAAGTATTGTATAGCCCCGAGTTGCAGGAAAGATTTCTTATATTGTGGTAACCAAGACATGGAAGGTTATGCAACTTGGAACAGGACAAGTGTGGAGTCAAGTTGCAAACCTGCTGATGATAATAAACTGTTTGATTTTGGAATCTTTCAACAGGCTTTGTCCTCTGGCATTGCAGCATCCAAGAATTTTATCAACAAATATTGTTACTGTCTATGGTGGGGCCTACAAAACTTAAGTACGCTTGGGCAGGGGCTTCAAACAAGCACGTATCCGTGGGAAGTTATCTTTTCCATAGCATTGGCGGTACTTGGTCTCATCCTCTTTGCGCTTCTTATTGGCAACATGCAGACTTATCTTCAATCTCTAACTATAAGGCTGGAGGAAATGAGGGTAAAAAGACGTGATTCGGAGCAGTGGATGCATCACCGCTTGCTGCCACAAGAACTTCGGGAGAGAGTCAGGCGTTATGATCAGTACAAGTGGTTGGAGACCCGTGGGGTGGACGAACAGAGTTTGGTTCAAACTCTACCTAAGGATCTTAGGAGAGATATTAAACGGCATCTTTGTCTGGCTCTAGTAAGAAGGGTTCCTCTGTTTGAAAGCATGGACGAGAGGCTGCTTGATGCTATCTGTGAGCGGCTGAAGCCATGTTTGTTTACGGAGTACACTTACATAGTCCGTGAAGGTGATCCAGTTGATGAGATGCTTTTCATTATACGTGGTCGGCTCGAGAGTGTGACTACGGATGGTGGGCGGAGTGGATTTTTCAACCGTACCTTTCTGAAAGAAGGTGATTTTTGTGGTGAAGAGCTTTTGACCTGGGCTCTGGATCCAAAATCTGGTTCGAATCTTCCATCTTCTACAAGGACTGTAAAGGCTATTACAGAGGTTGAGGCTTTTGCCCTTGTTGCTGAAGAGTTGAAATTTGTGGCCAGTCAGTTCAGGCGCCTTCACAGTAGACAGGTGCAACATACCTTCCGTTTCTACTCTCAGCAATGGAGAACCTGGGCTGCTTGCTTCATCCAAGCGGCGTGGCGTCGGTATTCCAAGAGAAAGTCTATGGAACTTCGTCAAAAGGAAGAAGTTGCAGCCGAAGAATCTGAGGGATCTCAGACTGCCACAAGTGGAGGCTCTTATAGTATTCGGGCAACTTTCTTAGCCTCCAAATTTGCTGCCAATGCTCTTCGGGGTGTTCAGCGATATCGGAATGCAAAGAGCGCTCAGGAATTGATAAAACTACAGAAGCCTCCAGAGCCAGATTTTAGCGCCGATGATGCCGATTGA 2196 43.53 MFDCGYKSQLMGGQREKFVRLDDLDSRLSSPSDSGMRRCGFNIDGFNRAVHGSDKPSGSFKRGMRKGSEGLKSIGRSLKFGVSRAVFPEDLKESKKKIFDPQDKLLLFLNKLFVISCILAISVDPLFFYVPVINQNSNCLGIDRKLAITVTTLRTIIDVFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIIDLVSVLPLPQIVVWRFLQRSKGSDVYVTKQALLLIVFLQYIPRFLRAFPLASELKRTTGVFAETAWAGAAYYLLLYMLASHIVGALWYLLAVERNDSCWQKYCIAPSCRKDFLYCGNQDMEGYATWNRTSVESSCKPADDNKLFDFGIFQQALSSGIAASKNFINKYCYCLWWGLQNLSTLGQGLQTSTYPWEVIFSIALAVLGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLETRGVDEQSLVQTLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTEYTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRTFLKEGDFCGEELLTWALDPKSGSNLPSSTRTVKAITEVEAFALVAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKSMELRQKEEVAAEESEGSQTATSGGSYSIRATFLASKFAANALRGVQRYRNAKSAQELIKLQKPPEPDFSADDAD 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42515033 42543490 + Lag0006443.1 Lac6g2474 612243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2474 731 FunFam Cyclic nucleotide-gated ion channel 1 429 493 - -
Lac6g2474 731 FunFam Cyclic nucleotide-gated ion channel 1 500 618 - -
Lac6g2474 731 Pfam Ion transport protein 112 428 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac6g2474 731 SUPERFAMILY Voltage-gated potassium channels 101 424 - -
Lac6g2474 731 ProSiteProfiles IQ motif profile. 638 667 - -
Lac6g2474 731 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 83 719 - -
Lac6g2474 731 SMART cnmp_10 502 633 IPR000595 -
Lac6g2474 731 Pfam Cyclic nucleotide-binding domain 527 612 IPR000595 -
Lac6g2474 731 Gene3D Jelly Rolls 500 620 IPR014710 -
Lac6g2474 731 PRINTS EAG/ELK/ERG potassium channel family signature 165 174 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac6g2474 731 PRINTS EAG/ELK/ERG potassium channel family signature 282 292 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac6g2474 731 PRINTS EAG/ELK/ERG potassium channel family signature 154 164 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac6g2474 731 PRINTS EAG/ELK/ERG potassium channel family signature 397 408 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac6g2474 731 PRINTS EAG/ELK/ERG potassium channel family signature 465 472 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac6g2474 731 PRINTS EAG/ELK/ERG potassium channel family signature 371 388 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac6g2474 731 PRINTS EAG/ELK/ERG potassium channel family signature 415 424 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac6g2474 731 SUPERFAMILY cAMP-binding domain-like 431 622 IPR018490 -
Lac6g2474 731 Gene3D - 109 427 - -
Lac6g2474 731 ProSiteProfiles cAMP/cGMP binding motif profile. 502 586 IPR000595 -
Lac6g2474 731 Gene3D Helix hairpin bin 430 493 - -
Lac6g2474 731 CDD CAP_ED 502 633 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g3020 Lac-Chr5:48096509 Lac6g2474 Lac-Chr6:42515033 2.70E-38 dispersed
Lac5g3021 Lac-Chr5:48103085 Lac6g2474 Lac-Chr6:42515033 1.40E-151 dispersed
Lac5g3023 Lac-Chr5:48121450 Lac6g2474 Lac-Chr6:42515033 5.20E-133 dispersed
Lac5g3025 Lac-Chr5:48136960 Lac6g2474 Lac-Chr6:42515033 3.40E-125 dispersed
Lac6g2474 Lac-Chr6:42515033 Lac8g0435 Lac-Chr8:5586285 4.80E-302 dispersed
Lac6g2474 Lac-Chr6:42515033 Lac11g0144 Lac-Chr11:1326104 2.10E-217 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2474 K05391 - csv:101219180 1363.98