Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac6g2474 | ATGTTTGATTGTGGTTACAAGTCACAACTGATGGGTGGTCAACGAGAAAAGTTCGTGAGGTTGGATGACTTGGACTCTAGATTGTCATCCCCATCAGATAGTGGAATGAGAAGATGTGGTTTTAATATAGATGGATTTAACCGTGCAGTCCATGGAAGTGATAAGCCATCTGGATCCTTTAAGAGAGGAATGAGAAAAGGGTCTGAAGGACTTAAATCAATCGGCCGATCACTCAAGTTTGGGGTTTCTCGAGCTGTATTTCCAGAGGATCTTAAAGAGTCAAAGAAGAAGATCTTTGATCCTCAAGACAAGTTGCTCTTATTTTTGAATAAACTTTTTGTCATATCATGTATTTTGGCAATATCTGTGGACCCACTATTCTTTTATGTTCCTGTCATTAACCAAAACTCAAACTGTCTTGGCATTGATAGAAAGCTGGCAATTACAGTGACAACATTGCGGACAATTATTGATGTTTTCTATCTTATTCATATGGCTCTCCAATTCCGGACAGCTTATATTGCTCCATCATCTCGGGTGTTTGGGAGAGGTGAACTTGTGATTGATCCTGCACAAATAGCAAAGCGATACTTGCGGCGGTATTTCATCATTGATTTGGTGTCTGTGCTGCCTCTTCCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCAGATGTATATGTGACTAAGCAGGCCCTTCTTTTAATTGTATTCCTTCAATATATCCCAAGATTTCTTAGAGCGTTTCCATTGGCTTCAGAATTGAAAAGGACAACAGGCGTATTTGCAGAAACTGCTTGGGCAGGTGCTGCATATTATTTGCTATTATATATGCTTGCAAGTCATATAGTTGGAGCACTATGGTACTTATTGGCTGTGGAACGCAATGATTCATGTTGGCAGAAGTATTGTATAGCCCCGAGTTGCAGGAAAGATTTCTTATATTGTGGTAACCAAGACATGGAAGGTTATGCAACTTGGAACAGGACAAGTGTGGAGTCAAGTTGCAAACCTGCTGATGATAATAAACTGTTTGATTTTGGAATCTTTCAACAGGCTTTGTCCTCTGGCATTGCAGCATCCAAGAATTTTATCAACAAATATTGTTACTGTCTATGGTGGGGCCTACAAAACTTAAGTACGCTTGGGCAGGGGCTTCAAACAAGCACGTATCCGTGGGAAGTTATCTTTTCCATAGCATTGGCGGTACTTGGTCTCATCCTCTTTGCGCTTCTTATTGGCAACATGCAGACTTATCTTCAATCTCTAACTATAAGGCTGGAGGAAATGAGGGTAAAAAGACGTGATTCGGAGCAGTGGATGCATCACCGCTTGCTGCCACAAGAACTTCGGGAGAGAGTCAGGCGTTATGATCAGTACAAGTGGTTGGAGACCCGTGGGGTGGACGAACAGAGTTTGGTTCAAACTCTACCTAAGGATCTTAGGAGAGATATTAAACGGCATCTTTGTCTGGCTCTAGTAAGAAGGGTTCCTCTGTTTGAAAGCATGGACGAGAGGCTGCTTGATGCTATCTGTGAGCGGCTGAAGCCATGTTTGTTTACGGAGTACACTTACATAGTCCGTGAAGGTGATCCAGTTGATGAGATGCTTTTCATTATACGTGGTCGGCTCGAGAGTGTGACTACGGATGGTGGGCGGAGTGGATTTTTCAACCGTACCTTTCTGAAAGAAGGTGATTTTTGTGGTGAAGAGCTTTTGACCTGGGCTCTGGATCCAAAATCTGGTTCGAATCTTCCATCTTCTACAAGGACTGTAAAGGCTATTACAGAGGTTGAGGCTTTTGCCCTTGTTGCTGAAGAGTTGAAATTTGTGGCCAGTCAGTTCAGGCGCCTTCACAGTAGACAGGTGCAACATACCTTCCGTTTCTACTCTCAGCAATGGAGAACCTGGGCTGCTTGCTTCATCCAAGCGGCGTGGCGTCGGTATTCCAAGAGAAAGTCTATGGAACTTCGTCAAAAGGAAGAAGTTGCAGCCGAAGAATCTGAGGGATCTCAGACTGCCACAAGTGGAGGCTCTTATAGTATTCGGGCAACTTTCTTAGCCTCCAAATTTGCTGCCAATGCTCTTCGGGGTGTTCAGCGATATCGGAATGCAAAGAGCGCTCAGGAATTGATAAAACTACAGAAGCCTCCAGAGCCAGATTTTAGCGCCGATGATGCCGATTGA | 2196 | 43.53 | MFDCGYKSQLMGGQREKFVRLDDLDSRLSSPSDSGMRRCGFNIDGFNRAVHGSDKPSGSFKRGMRKGSEGLKSIGRSLKFGVSRAVFPEDLKESKKKIFDPQDKLLLFLNKLFVISCILAISVDPLFFYVPVINQNSNCLGIDRKLAITVTTLRTIIDVFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIIDLVSVLPLPQIVVWRFLQRSKGSDVYVTKQALLLIVFLQYIPRFLRAFPLASELKRTTGVFAETAWAGAAYYLLLYMLASHIVGALWYLLAVERNDSCWQKYCIAPSCRKDFLYCGNQDMEGYATWNRTSVESSCKPADDNKLFDFGIFQQALSSGIAASKNFINKYCYCLWWGLQNLSTLGQGLQTSTYPWEVIFSIALAVLGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLETRGVDEQSLVQTLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTEYTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRTFLKEGDFCGEELLTWALDPKSGSNLPSSTRTVKAITEVEAFALVAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKSMELRQKEEVAAEESEGSQTATSGGSYSIRATFLASKFAANALRGVQRYRNAKSAQELIKLQKPPEPDFSADDAD | 731 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 42515033 | 42543490 | + | Lag0006443.1 | Lac6g2474 | 612243 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac6g2474 | 731 | FunFam | Cyclic nucleotide-gated ion channel 1 | 429 | 493 | - | - | |
Lac6g2474 | 731 | FunFam | Cyclic nucleotide-gated ion channel 1 | 500 | 618 | - | - | |
Lac6g2474 | 731 | Pfam | Ion transport protein | 112 | 428 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac6g2474 | 731 | SUPERFAMILY | Voltage-gated potassium channels | 101 | 424 | - | - | |
Lac6g2474 | 731 | ProSiteProfiles | IQ motif profile. | 638 | 667 | - | - | |
Lac6g2474 | 731 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED | 83 | 719 | - | - | |
Lac6g2474 | 731 | SMART | cnmp_10 | 502 | 633 | IPR000595 | - | |
Lac6g2474 | 731 | Pfam | Cyclic nucleotide-binding domain | 527 | 612 | IPR000595 | - | |
Lac6g2474 | 731 | Gene3D | Jelly Rolls | 500 | 620 | IPR014710 | - | |
Lac6g2474 | 731 | PRINTS | EAG/ELK/ERG potassium channel family signature | 165 | 174 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Lac6g2474 | 731 | PRINTS | EAG/ELK/ERG potassium channel family signature | 282 | 292 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Lac6g2474 | 731 | PRINTS | EAG/ELK/ERG potassium channel family signature | 154 | 164 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Lac6g2474 | 731 | PRINTS | EAG/ELK/ERG potassium channel family signature | 397 | 408 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Lac6g2474 | 731 | PRINTS | EAG/ELK/ERG potassium channel family signature | 465 | 472 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Lac6g2474 | 731 | PRINTS | EAG/ELK/ERG potassium channel family signature | 371 | 388 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Lac6g2474 | 731 | PRINTS | EAG/ELK/ERG potassium channel family signature | 415 | 424 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Lac6g2474 | 731 | SUPERFAMILY | cAMP-binding domain-like | 431 | 622 | IPR018490 | - | |
Lac6g2474 | 731 | Gene3D | - | 109 | 427 | - | - | |
Lac6g2474 | 731 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 502 | 586 | IPR000595 | - | |
Lac6g2474 | 731 | Gene3D | Helix hairpin bin | 430 | 493 | - | - | |
Lac6g2474 | 731 | CDD | CAP_ED | 502 | 633 | IPR000595 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac5g3020 | Lac-Chr5:48096509 | Lac6g2474 | Lac-Chr6:42515033 | 2.70E-38 | dispersed | |
Lac5g3021 | Lac-Chr5:48103085 | Lac6g2474 | Lac-Chr6:42515033 | 1.40E-151 | dispersed | |
Lac5g3023 | Lac-Chr5:48121450 | Lac6g2474 | Lac-Chr6:42515033 | 5.20E-133 | dispersed | |
Lac5g3025 | Lac-Chr5:48136960 | Lac6g2474 | Lac-Chr6:42515033 | 3.40E-125 | dispersed | |
Lac6g2474 | Lac-Chr6:42515033 | Lac8g0435 | Lac-Chr8:5586285 | 4.80E-302 | dispersed | |
Lac6g2474 | Lac-Chr6:42515033 | Lac11g0144 | Lac-Chr11:1326104 | 2.10E-217 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac6g2474 | K05391 | - | csv:101219180 | 1363.98 |