Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2506 ATGGGCAATGATCTAAACCAAGAGCTATCAATGAAAACAAGCATATTTGGTCTAAAAGTGTGGGAAGTGATTGGAATTGGAGTAGGATTATTCATAGTCTCAATCCTCTGCATTCTCTCACTCTGTTTAACCTCTCGCAACAAGAAGTCAAGAAAATCATCATCAGCATCAGCAGCCAACTCCAGCACCTTATTCCCTGTCACTCAAATCCCATCTCATTCAAAGGACATAAAGGCAATTCACATCACCACCACACACAAAAAGCCAGCAATGGACAACAAGAACTACAGCAGTGAATCAGGATCATTGCATCCCTTGAGCTATGGCTGCGGATCGCAATCCGGGGACGAAGGCAGCTCCGGCACCGTCACGACGATGTACCGACGGTCGTGGTCGCCGACGACGGTGCCCTCGCCGCTGTCGGGGCTGCCGGAGATGTCGCAATTGGGGTGGGGGTATTGGTTTACTTTGAGGGAGCTGGATTTGGCTACCAATTTGTTCTCGGAAGAGAATTTGATTGGAGAAGGAGGGTATGGAGTTGTGTATAGAGGGTGCTTGCTGAATGGGACAGCAGTGGCAGTGAAGAAGATTTTTAATGGACAGGGCCAAGCAGAGAAGGAATTCAGAGCAGAAGTTGAGGCAATTGGGCATGTTAGACATAAGAATCTTGTTCGTCTTTTGGGATACTGCATCGAAGGGACTCATAGGATGCTAGTATACGACTATGTAAACAATGGAAGCTTAGAGCTATGGCTACATGGAGGAATGGGAGAGAATAGATTTCTTACATGGGAGGCTCGAATGAAGATCATGGTGGGAACAGCCAAAGGACTTGCATATTTACACGAAGCCATTGAGCCAAAGGTTGTACATCGAGACATCAAGGCCAGCAACATACTAATAGATGAAAATTTCAATGCCAAAGTATCAGACTTTGGGCTAGCAAAGTTGATGGATGCTGGGAAAACTCATGTTACAACACGAGTTATGGGGACGTTCGGATATGTGGCTCCTGAATATGCAAACACGGGACTTTTGAATGAGAAGAGCGATGTATATAGCTTTGGAGTTGTGTTGGTAGAGACAATCACGGGAAGAGATCCAGTGGACTATGGACGTCCAACCAAACAGGTGAATGTGGTAGATTGGCTGAAAATGATGATTGGAAGTAGGAGATGTGAAGAAGTGGTAGACCCAAGAATAGGAGGAAGACCATCAACAAGAGGGTTGAAAAAAGTTCTATTGGTTGCTTTGAGGTGTGTGGATCCTGATTATGAGAAGAGACCAAAGATGAGCCAAGTTGTTAGAATGCTTGAATCTCAAGATCATAATACTTCTTCTCATACACGTTGA 1353 45.08 MGNDLNQELSMKTSIFGLKVWEVIGIGVGLFIVSILCILSLCLTSRNKKSRKSSSASAANSSTLFPVTQIPSHSKDIKAIHITTTHKKPAMDNKNYSSESGSLHPLSYGCGSQSGDEGSSGTVTTMYRRSWSPTTVPSPLSGLPEMSQLGWGYWFTLRELDLATNLFSEENLIGEGGYGVVYRGCLLNGTAVAVKKIFNGQGQAEKEFRAEVEAIGHVRHKNLVRLLGYCIEGTHRMLVYDYVNNGSLELWLHGGMGENRFLTWEARMKIMVGTAKGLAYLHEAIEPKVVHRDIKASNILIDENFNAKVSDFGLAKLMDAGKTHVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVVLVETITGRDPVDYGRPTKQVNVVDWLKMMIGSRRCEEVVDPRIGGRPSTRGLKKVLLVALRCVDPDYEKRPKMSQVVRMLESQDHNTSSHTR 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42865381 42868719 + Lag0006475.1 Lac6g2506 612275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2506 450 PANTHER OS01G0323000 PROTEIN 1 447 IPR052232 -
Lac6g2506 450 Pfam Protein kinase domain 168 436 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g2506 450 SUPERFAMILY Protein kinase-like (PK-like) 141 442 IPR011009 -
Lac6g2506 450 SMART serkin_6 167 438 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g2506 450 Gene3D Phosphorylase Kinase; domain 1 146 242 - -
Lac6g2506 450 FunFam Putative receptor-like serine/threonine-protein kinase 243 450 - -
Lac6g2506 450 ProSitePatterns Protein kinases ATP-binding region signature. 173 196 IPR017441 GO:0005524(InterPro)
Lac6g2506 450 FunFam serine/threonine-protein kinase PBS1-like 142 242 - -
Lac6g2506 450 Gene3D Transferase(Phosphotransferase) domain 1 243 449 - -
Lac6g2506 450 CDD STKc_IRAK 173 439 - -
Lac6g2506 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 289 301 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g2506 450 ProSiteProfiles Protein kinase domain profile. 167 450 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g2506 Lac-Chr6:42865381 Lac9g2257 Lac-Chr9:41932067 1.20E-154 dispersed
Lac8g2052 Lac-Chr8:39018970 Lac6g2506 Lac-Chr6:42865381 9.10E-51 dispersed
Lac6g2506 Lac-Chr6:42865381 Lac12g0877 Lac-Chr12:9089906 2.40E-155 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86278 PF00069 Pkinase 7.40E-49 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2506 - - - 0.0