Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2534 ATGGAAGAGTTTTACAGGCTTAACAACTCTGTTATATCCTCATACACTAATGGTGTTGTTGCAGGTGAAGCCATTGCAAGCACTAGCTGTGGTGGGATTCATGGAGCTCTAATGGTGGATGATGATATGCTTCAGCTTGAAGCTGAGGCCACCACTGCCTTGAACATGTCTGACATGATCAAGACTCAAATTGTCAACCATCCCCTTTATCCCAAACTGGTTTCTGCTTACATTGAATGCCAAAAAGTTGGAGCTCCACCACAAGTGGCTTCTCTTCTTGAAGAAATTGGTCGTGAAAATCACCCTCCTAGGTCTGGTATTGAGCTGGGAGCTGATCCTCAACTGGACAACTTCATGGAATCATATTGTGAGGTTCTTCATCAATATAAGAATGAGCTATCCAAGCCATTTGATGAAGCAACAATGTTCTTGACCAACATTGAATTGGAGTTAAGCAACCTGTGTAAAGGATCATTTACCACGACGTCGGATTCTCGCTCCGCTATGAATGATGAAGTAGTCGGGACGCCGGAGGAAGAACGGAGCAGCTTCGGCGAGGTGGAAATGCCGGGAAATCACGAGTCATTCTGCACGAGGCAAACGAACCAAGACCTCAAAGAAATGCTGCTGAAGAAATACAGTGGCTACCTCAGCAGTTTGAAGAAGGAATTCTTGAAGAAAAGGAAGAAGGAGAAGCTGCCAAAGGATGCAAGAATGGCTCTATTTGACTGGTGGAACACTCATTATAAATGGCCTTATCCCACAGAAGAGGAAAAATCAAAACTTTCTGATATCACTGGTTTGGACCAAAAGCAGATCAACAACTGGTTCATAAACCAGAGAAAGCGGCACTGGAAGCCGCCCGAAGATATGCGATTCGCGCTCATGGACGGGGTCGGAGAATGTATCAAAGGATCAAATTTTTATGACAATGGAGGAGAAACTGGAGGCCATGTAATTTGA 963 44.55 MEEFYRLNNSVISSYTNGVVAGEAIASTSCGGIHGALMVDDDMLQLEAEATTALNMSDMIKTQIVNHPLYPKLVSAYIECQKVGAPPQVASLLEEIGRENHPPRSGIELGADPQLDNFMESYCEVLHQYKNELSKPFDEATMFLTNIELELSNLCKGSFTTTSDSRSAMNDEVVGTPEEERSSFGEVEMPGNHESFCTRQTNQDLKEMLLKKYSGYLSSLKKEFLKKRKKEKLPKDARMALFDWWNTHYKWPYPTEEEKSKLSDITGLDQKQINNWFINQRKRHWKPPEDMRFALMDGVGECIKGSNFYDNGGETGGHVI 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43116099 43118474 + Lag0006503.1 Lac6g2534 612303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2534 320 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 57 296 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac6g2534 320 Pfam KNOX2 domain 109 155 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac6g2534 320 SMART KNOX1_2 58 102 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac6g2534 320 SMART HOX_1 226 291 IPR001356 GO:0003677(InterPro)
Lac6g2534 320 SUPERFAMILY Homeodomain-like 226 294 IPR009057 -
Lac6g2534 320 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac6g2534 320 Pfam Homeobox KN domain 244 283 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac6g2534 320 MobiDBLite consensus disorder prediction 173 187 - -
Lac6g2534 320 MobiDBLite consensus disorder prediction 166 193 - -
Lac6g2534 320 Gene3D - 222 294 - -
Lac6g2534 320 ProSiteProfiles ELK domain profile. 204 224 IPR005539 GO:0003677(InterPro)
Lac6g2534 320 CDD homeodomain 236 287 IPR001356 GO:0003677(InterPro)
Lac6g2534 320 ProSitePatterns 'Homeobox' domain signature. 262 285 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac6g2534 320 SMART ELK_2 204 225 IPR005539 GO:0003677(InterPro)
Lac6g2534 320 Pfam ELK domain 204 225 IPR005539 GO:0003677(InterPro)
Lac6g2534 320 ProSiteProfiles 'Homeobox' domain profile. 224 287 IPR001356 GO:0003677(InterPro)
Lac6g2534 320 SMART KNOX2_2 105 156 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0183 Lac-Chr13:1279830 Lac6g2534 Lac-Chr6:43116099 5.80E-29 dispersed
Lac2g0570 Lac-Chr2:4305795 Lac6g2534 Lac-Chr6:43116099 4.70E-29 dispersed
Lac6g0216 Lac-Chr6:1692084 Lac6g2534 Lac-Chr6:43116099 1.40E-58 dispersed
Lac6g0614 Lac-Chr6:5232142 Lac6g2534 Lac-Chr6:43116099 6.50E-29 dispersed
Lac6g1297 Lac-Chr6:13038368 Lac6g2534 Lac-Chr6:43116099 7.00E-34 dispersed
Lac6g1299 Lac-Chr6:13067718 Lac6g2534 Lac-Chr6:43116099 7.10E-31 dispersed
Lac6g2534 Lac-Chr6:43116099 Lac2g0436 Lac-Chr2:3206245 2.80E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24064 PF03791 KNOX2 3.70E-21 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2534 - - - 0.0