Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2538 ATGTGTTGCCAAGGTCTCCTTTTGGTCCAAAAAGTCTCAGAACTTTACCACAAAATCTCCACTCTCGAAAGCCTCAAACCCTCCAAAGATGTCAACTCCCTCTTCTCTCAACTCGTCCTCATCTGCTCGCCTCCGCCGCCGTCTCCGCCGCCCATAGACGTCTCCAAGCTCTGCTCCGCCGTCCAAAATATGAGATCCCATCTCATCAAGCTCTGCGGCGAGGCTGAGGCCCTTCTCGAGCACCATTACTCCACCATTTTAGCCTCCCACCAAAACCCACTTGACCATCTCTCCATTTTCCCTTATTACTCCAACTATCTCAAACTAACCCACCTTGAATTCTCCATTTTTACCCGCCACGCGCCCCACGCGCCGCCGTCCAAGGTGGCATTTGTTGGCTCCGGCGCGCTTCCGTTCTCATCCATCATCATGGCCTTGAAGTACCTCCCGACGACCGAGTTTCACAACTTCGACGTCGACCCGTCTGCCAATGCGAAAGCGGCGGCGTTGGTGGCGGGCGACGCGGACTTGTCGAGGCGGATGACGTTCCACACGACGGATATCATGGAGGTGAATGCGAGTGAGTTGGGGGAGTTTGAGGTGGTGTTTTTGGCGGCGTTGGTGGGGATGGAGAGGGAGGAGAAGGTGAAGGTGATCGAGCATTTGGGGAAGAACATGGCCGGCGGCGCGTTGTTGATGTTGAGGAGCGCGTATGGTGCACGCGCGTTTCTTTATCCGGTGGTGGAAGCTTGTGATCTTCGAGGGTTTGAGATTCTTACCGTGTTTCATCCGACTGACGAGGTTATCAATTCGATCGTGTTGGCACGATTATAA 834 54.44 MCCQGLLLVQKVSELYHKISTLESLKPSKDVNSLFSQLVLICSPPPPSPPPIDVSKLCSAVQNMRSHLIKLCGEAEALLEHHYSTILASHQNPLDHLSIFPYYSNYLKLTHLEFSIFTRHAPHAPPSKVAFVGSGALPFSSIIMALKYLPTTEFHNFDVDPSANAKAAALVAGDADLSRRMTFHTTDIMEVNASELGEFEVVFLAALVGMEREEKVKVIEHLGKNMAGGALLMLRSAYGARAFLYPVVEACDLRGFEILTVFHPTDEVINSIVLARL 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43167758 43168591 - Lag0006507.1 Lac6g2538 612307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2538 277 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 83 229 IPR029063 -
Lac6g2538 277 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 277 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Lac6g2538 277 PANTHER NICOTIANAMINE SYNTHASE 3 8 276 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Lac6g2538 277 Pfam Nicotianamine synthase protein 7 276 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Lac6g2538 277 Gene3D Vaccinia Virus protein VP39 5 277 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2538 K05953 - - csv:101219339 454.907
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0308 Lac-Chr3:2184560 Lac6g2538 Lac-Chr6:43167758 8.90E-71 transposed
Lac3g3011 Lac-Chr3:48185302 Lac6g2538 Lac-Chr6:43167758 1.10E-73 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g2538 . 1 276 Nicotianamine Synthase Gene Family AT1G09240 61.0 2.5e-90 329.7
Lac3g3011 . 1 212 Nicotianamine Synthase Gene Family AT1G09240 64.0 2.7e-76 283.1
Lac3g0308 . 16 284 Nicotianamine Synthase Gene Family AT1G09240 55.1 2.3e-75 280.0
Lac6g2538 . 3 276 Nicotianamine Synthase Gene Family AT1G56430 60.7 1.5e-90 330.5
Lac3g0308 . 18 281 Nicotianamine Synthase Gene Family AT1G56430 55.2 1.3e-78 290.8
Lac3g3011 . 1 248 Nicotianamine Synthase Gene Family AT1G56430 58.0 2.3e-78 290.0
Lac6g2538 . 1 276 Nicotianamine Synthase Gene Family AT5G04950 58.6 9.6e-90 327.8
Lac3g3011 . 1 212 Nicotianamine Synthase Gene Family AT5G04950 60.9 1.1e-74 277.7
Lac3g0308 . 18 281 Nicotianamine Synthase Gene Family AT5G04950 51.5 1.3e-73 274.2
Lac6g2538 . 1 276 Nicotianamine Synthase Gene Family AT5G56080 58.1 1.8e-88 323.6
Lac3g3011 . 1 212 Nicotianamine Synthase Gene Family AT5G56080 62.0 7.9e-76 281.6
Lac3g0308 . 18 281 Nicotianamine Synthase Gene Family AT5G56080 52.1 1.8e-72 270.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125