Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2538 ATGTGTTGCCAAGGTCTCCTTTTGGTCCAAAAAGTCTCAGAACTTTACCACAAAATCTCCACTCTCGAAAGCCTCAAACCCTCCAAAGATGTCAACTCCCTCTTCTCTCAACTCGTCCTCATCTGCTCGCCTCCGCCGCCGTCTCCGCCGCCCATAGACGTCTCCAAGCTCTGCTCCGCCGTCCAAAATATGAGATCCCATCTCATCAAGCTCTGCGGCGAGGCTGAGGCCCTTCTCGAGCACCATTACTCCACCATTTTAGCCTCCCACCAAAACCCACTTGACCATCTCTCCATTTTCCCTTATTACTCCAACTATCTCAAACTAACCCACCTTGAATTCTCCATTTTTACCCGCCACGCGCCCCACGCGCCGCCGTCCAAGGTGGCATTTGTTGGCTCCGGCGCGCTTCCGTTCTCATCCATCATCATGGCCTTGAAGTACCTCCCGACGACCGAGTTTCACAACTTCGACGTCGACCCGTCTGCCAATGCGAAAGCGGCGGCGTTGGTGGCGGGCGACGCGGACTTGTCGAGGCGGATGACGTTCCACACGACGGATATCATGGAGGTGAATGCGAGTGAGTTGGGGGAGTTTGAGGTGGTGTTTTTGGCGGCGTTGGTGGGGATGGAGAGGGAGGAGAAGGTGAAGGTGATCGAGCATTTGGGGAAGAACATGGCCGGCGGCGCGTTGTTGATGTTGAGGAGCGCGTATGGTGCACGCGCGTTTCTTTATCCGGTGGTGGAAGCTTGTGATCTTCGAGGGTTTGAGATTCTTACCGTGTTTCATCCGACTGACGAGGTTATCAATTCGATCGTGTTGGCACGATTATAA 834 54.44 MCCQGLLLVQKVSELYHKISTLESLKPSKDVNSLFSQLVLICSPPPPSPPPIDVSKLCSAVQNMRSHLIKLCGEAEALLEHHYSTILASHQNPLDHLSIFPYYSNYLKLTHLEFSIFTRHAPHAPPSKVAFVGSGALPFSSIIMALKYLPTTEFHNFDVDPSANAKAAALVAGDADLSRRMTFHTTDIMEVNASELGEFEVVFLAALVGMEREEKVKVIEHLGKNMAGGALLMLRSAYGARAFLYPVVEACDLRGFEILTVFHPTDEVINSIVLARL 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43167758 43168591 - Lag0006507.1 Lac6g2538 612307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2538 277 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 83 229 IPR029063 -
Lac6g2538 277 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 277 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Lac6g2538 277 PANTHER NICOTIANAMINE SYNTHASE 3 8 276 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Lac6g2538 277 Pfam Nicotianamine synthase protein 7 276 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Lac6g2538 277 Gene3D Vaccinia Virus protein VP39 5 277 IPR029063 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0308 Lac-Chr3:2184560 Lac6g2538 Lac-Chr6:43167758 8.90E-71 transposed
Lac3g3011 Lac-Chr3:48185302 Lac6g2538 Lac-Chr6:43167758 1.10E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2538 K05953 - csv:101219339 454.907