Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2547 ATGGGAGGTTTGAGTGAGGGTCTAACACAGTTGTTGATACCTGCAGCTGCCTTGCTTGGTATTGGATTTGCCCTTCTTCAATGGATTTTGGTCTCAAGAGTTAAGGTTTCTGGCTATGCTGATGATGAAAGCCAAGAAAACAATTTGATTGAAAGAGGACAAGAGGAAGGTATTGACGATGCCGAGGTTGTCGCGAAGTGTGCCGAAATCCAGAAGGCCATTTCTGTTGGAGCAACTTCATTTTTGTTCACTCAGTATAAGTACCTTGTTGTCTTCATGGGAGCATTTGGAGCCATCATTTTTCTGTTCCTTGGTTCAGTCAAGAGCTTCAGCACCAAAAGTGAACCTTGCACATACAACAAAGGACAGATGTGTAAACCAGCTCTAGCCAATGCCATCTTTAGCACAATTGCCTTCTTTCTAGGTGCTCTCACCTCAGTCCTATCTGGTTTCCTTGGAATGAAGATTGCAACTTATGCAAATGCCCGAACAAGCCTAGAAGCACGGAAAGGCATTGGAAAAGCATTCACTATCGCCTTTCGCTCCGGTGCTGTGATGGGATTCCTTCTAGCTGCCAATGGCCTCCTTGTATTATATGCCTCCATCAATTTGTTTAAGCTGTATTATGGCGACGACTGGGAAGGACTGTACGAATCTATCACGGGTTACGGTCTTGGAGGCTCTTCAATGGCGCTGTTCGGAAGAGTTGGGGGAGGCATATACACAAAAGCAGCTGATGTTGGAGCTGATCTTGTTGGGAAAATTGAAAAGAATATCCCTGAAGACGATCCGCGAAATCCCGCTGTCATAGCTGACAATGTGGGTGACAATGTAGGAGATATTGCAGGAATGGGATCTGACTTATTTGGATCTTATGCAGAATCAACCTGTGCTGCACTTTTCGTAGCGTCGATATCATCATTCGGCTTCACACATAACTATGCAGCCATGTCGTACCCTTTACTTATAAGCTCAATGGGCATTGTGATTTGCTTAATAACTACACTTTTTGCAACTGATCTCATTGAAATTAAGAAAGTGAGCGAAATCGAACCGTCGTTAAAGCGACAGCTTCTTATCTCCACTGTGCTGATGACAGCAGGAGTAGCTTTTGTCAGCTTTGTTGCTTTACCTTCAAAATTCACTCTCTACGATTTCGGCATCGACAAGGTCGTGAAGAACTGGCACCTTTTCTTCTGTGTTGTGACAGGTTTGTGGGCAGGACTTGTTATTGGATATACAACTGAGTATTACACTAGCAATGCTTACAGTCCAGTGCAGGATGTGGCTGATTCTTGTAGAACCGGTGCTGCAACGAATGTAATATTTGGATTAGCTCTCGGATACAAATCCGTCATCATTCCCATATTTTCGATTGCCTTATCCATTTACGTGAGCTTCCGCTTGGCAGCCATGTACGGTATCGCAATGGCTGCTTTGGGAATGCTTAGCACCATTGCCACTGGTCTAGCCATTGATGCTTATGGACCTATAAGTGACAATGCAGGTGGAATAGCCGAAATGGCTGGAATGAGCCACGAGATACGTGAGAGAACCGATGCTTTAGACGCTGCAGGAAACACAACCGCAGCCATAGGAAAGGGCTTTGCCATTGGATCAGCTGCTCTTGTTTCCCTCGCCTTGTTCGGCGCCTTTGTGAGCCGAGCAGGCATCGAAACAGTCAATGTCTTGAACCCGAAAGTCTTCATTGGATTGATAGTAGGTGCTATGCTTCCATACTGGTTTTCAGCCATGACAATGAAGAGCGTTGGCAGCGCAGCGCTGAAGATGGTCGAGGAAGTTCGACGACAATTCAACTCTATCCCAGGGTTGATGGAAGGCAGGACGAAGCCGGACTATGCAAATTGTGTCAAGATATCGACCGATGCGTCGCTTAGAGAGATGATCCCTCCTGGTGCTCTGGTTTTGGTATCACCACTCATTGCTGGAACATTCTTTGGAGTTGAAACTCTTGCTGGCCTTCTGGCAGGCTCCCTTGTTTCTGGTGTGCAGGTTGCAATCTCTGCTTCAAACACAGGTGGGGCTTGGGACAATGCCAAAAAGTACATAGAGGCCGGAGCAAGCGAACATGCTAAAGCGCTCGGCCCCAAAGGGTCAGATGCTCACAAGGCAGCTGTGATAGGTGACACAGTTGGGGACCCTCTCAAAGACACTTCTGGTCCTTCACTCAATATTCTCATCAAGCTCATGGCTGTTGAGTCTTTGGTTTTTGCCCCATTTTTTGCTGCTCATGGTGGCCTCATCTTCAAGCATATATAA 2280 46.32 MGGLSEGLTQLLIPAAALLGIGFALLQWILVSRVKVSGYADDESQENNLIERGQEEGIDDAEVVAKCAEIQKAISVGATSFLFTQYKYLVVFMGAFGAIIFLFLGSVKSFSTKSEPCTYNKGQMCKPALANAIFSTIAFFLGALTSVLSGFLGMKIATYANARTSLEARKGIGKAFTIAFRSGAVMGFLLAANGLLVLYASINLFKLYYGDDWEGLYESITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKIEKNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESTCAALFVASISSFGFTHNYAAMSYPLLISSMGIVICLITTLFATDLIEIKKVSEIEPSLKRQLLISTVLMTAGVAFVSFVALPSKFTLYDFGIDKVVKNWHLFFCVVTGLWAGLVIGYTTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFSIALSIYVSFRLAAMYGIAMAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHEIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAGIETVNVLNPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNSIPGLMEGRTKPDYANCVKISTDASLREMIPPGALVLVSPLIAGTFFGVETLAGLLAGSLVSGVQVAISASNTGGAWDNAKKYIEAGASEHAKALGPKGSDAHKAAVIGDTVGDPLKDTSGPSLNILIKLMAVESLVFAPFFAAHGGLIFKHI 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43231348 43237046 + Lag0006516.1 Lac6g2547 612316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2547 759 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 12 757 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Lac6g2547 759 Pfam Inorganic H+ pyrophosphatase 60 744 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Lac6g2547 759 NCBIfam V-type H(+)-translocating pyrophosphatase 9 754 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Lac6g2547 759 PIRSF H+-PPtase 16 757 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Lac6g2547 759 Hamap Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 7 749 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0744 Lac-Chr3:5870933 Lac6g2547 Lac-Chr6:43231348 0.00E+00 dispersed
Lac5g0001 Lac-Chr5:52216 Lac6g2547 Lac-Chr6:43231348 3.40E-110 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2547 K23025 - csv:101205277 1409.05