Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2554 ATGGCTCATACCAGCAATACTGCTGCTGGAGTTGATAACACCTTTAGAAGAAAATTTGATCGAGAGGAGTATTTGGAACGAGCTCGTGACCGTGAAAAACAGGAGGCCGAGAGGGTTAAGTCCAAATTGAAAGGTCCACCAGTGCAAAGAAAGCCATTGAAACATAGAGATTACGAGGTAGACCTTGAGTCCCGATTGGGAAAAACCCAGGTCGTCACTCCAGTTGCGCCTCTAAGCCAGCAGGCTGGATACTACTGTTCCGTTTGTGAATGTGTGGTCAAGGATTCTGCAAATTACTTGGATCATATCAATGGAAAGAAACATCAGAGAGCCTTGGGTATGTCCATGCGGGTAGAACGGGCATCTCTTGAACAGGTGCAGGAGCGGTTTGAAGTTCTTAAAAGAGAAAAACGCCTGGAAGCTTCACAGAGCAAGGTAAAGCTTCAGAGTTCGAATCTTGAAGAGCGTATACTAAAGCAGCAACAAGAAGAAGAACAACGGAAGCGCGAGCGTCGAGAAAGGAAGAAAGAAAAGAAGAAAGAGAAGGCTGCAGAAGAGGAACCAGAAGTAGATCCTGACGTTGCGGCAATGATGGGATTTGGGGGCTTCCGTTCATCCAAGAAGTGA 627 46.41 MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLKREKRLEASQSKVKLQSSNLEERILKQQQEEEQRKRERRERKKEKKKEKAAEEEPEVDPDVAAMMGFGGFRSSKK 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43266358 43269008 - Lag0006523.1 Lac6g2554 612323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2554 208 Coils Coil 150 187 - -
Lac6g2554 208 Coils Coil 22 42 - -
Lac6g2554 208 Coils Coil 116 143 - -
Lac6g2554 208 SMART ZnF_U1_5 81 115 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Lac6g2554 208 MobiDBLite consensus disorder prediction 26 53 - -
Lac6g2554 208 SUPERFAMILY beta-beta-alpha zinc fingers 80 125 IPR036236 -
Lac6g2554 208 Pfam Zinc-finger of C2H2 type 84 108 IPR013087 -
Lac6g2554 208 FunFam zinc finger matrin-type protein 2-like 78 116 - -
Lac6g2554 208 Gene3D Classic Zinc Finger 79 116 - -
Lac6g2554 208 MobiDBLite consensus disorder prediction 152 208 - -
Lac6g2554 208 MobiDBLite consensus disorder prediction 157 189 - -
Lac6g2554 208 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 8 208 IPR040107 GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0005681(InterPro)|GO:0046540(PANTHER)
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24067 PF12171 zf-C2H2_jaz 1.90E-06 CL0361 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2554 K12848 - csv:101206387 315.849