Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac6g2554 | ATGGCTCATACCAGCAATACTGCTGCTGGAGTTGATAACACCTTTAGAAGAAAATTTGATCGAGAGGAGTATTTGGAACGAGCTCGTGACCGTGAAAAACAGGAGGCCGAGAGGGTTAAGTCCAAATTGAAAGGTCCACCAGTGCAAAGAAAGCCATTGAAACATAGAGATTACGAGGTAGACCTTGAGTCCCGATTGGGAAAAACCCAGGTCGTCACTCCAGTTGCGCCTCTAAGCCAGCAGGCTGGATACTACTGTTCCGTTTGTGAATGTGTGGTCAAGGATTCTGCAAATTACTTGGATCATATCAATGGAAAGAAACATCAGAGAGCCTTGGGTATGTCCATGCGGGTAGAACGGGCATCTCTTGAACAGGTGCAGGAGCGGTTTGAAGTTCTTAAAAGAGAAAAACGCCTGGAAGCTTCACAGAGCAAGGTAAAGCTTCAGAGTTCGAATCTTGAAGAGCGTATACTAAAGCAGCAACAAGAAGAAGAACAACGGAAGCGCGAGCGTCGAGAAAGGAAGAAAGAAAAGAAGAAAGAGAAGGCTGCAGAAGAGGAACCAGAAGTAGATCCTGACGTTGCGGCAATGATGGGATTTGGGGGCTTCCGTTCATCCAAGAAGTGA | 627 | 46.41 | MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLKREKRLEASQSKVKLQSSNLEERILKQQQEEEQRKRERRERKKEKKKEKAAEEEPEVDPDVAAMMGFGGFRSSKK | 208 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 43266358 | 43269008 | - | Lag0006523.1 | Lac6g2554 | 612323 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac6g2554 | 208 | Coils | Coil | 150 | 187 | - | - | |
Lac6g2554 | 208 | Coils | Coil | 22 | 42 | - | - | |
Lac6g2554 | 208 | Coils | Coil | 116 | 143 | - | - | |
Lac6g2554 | 208 | SMART | ZnF_U1_5 | 81 | 115 | IPR003604 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Lac6g2554 | 208 | MobiDBLite | consensus disorder prediction | 26 | 53 | - | - | |
Lac6g2554 | 208 | SUPERFAMILY | beta-beta-alpha zinc fingers | 80 | 125 | IPR036236 | - | |
Lac6g2554 | 208 | Pfam | Zinc-finger of C2H2 type | 84 | 108 | IPR013087 | - | |
Lac6g2554 | 208 | FunFam | zinc finger matrin-type protein 2-like | 78 | 116 | - | - | |
Lac6g2554 | 208 | Gene3D | Classic Zinc Finger | 79 | 116 | - | - | |
Lac6g2554 | 208 | MobiDBLite | consensus disorder prediction | 152 | 208 | - | - | |
Lac6g2554 | 208 | MobiDBLite | consensus disorder prediction | 157 | 189 | - | - | |
Lac6g2554 | 208 | PANTHER | ZINC FINGER MATRIN-TYPE PROTEIN 2 | 8 | 208 | IPR040107 | GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0005681(InterPro)|GO:0046540(PANTHER) |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24067 | PF12171 | zf-C2H2_jaz | 1.90E-06 | CL0361 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac6g2554 | K12848 | - | csv:101206387 | 315.849 |