Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2561 ATGGCGTCGAGGAATCGGACTTTGATTTTTAGGAAATACAGGGACGCGTTGAGGAGTGTGAGGGTTCCTACCAGCTCTTCGCCTGCTTCTGCATCGCCATCGACTAGTTCTGGCGCTGGTGGACCGGTGATTGAATTGGTTAGCTCGTCTTTGTTGCATCAGAATCGGTCGTACGCTCCCTTAAGTACTGAGGATCCGGGTAATTCAAGTAAGGGTGCTGTTACTGTGGGTCTACCTCCAGCTTGGGTGGATGTATCCGAAGAAATAGCTGCAAATGTGCAACGTGCACGAGTAAAGATGGTGGAGTTAGCTAAAGCTCATGCAAAGGCTTTAATGCCTTCATTTGGAGATGGTAAAGAAGATCAACGATTAATTGAGTCTCTCACGCAAGACATAACTAGTTTAATCAAGAAATCAGAGAAGGGACTCAAGAGACTCTCTGTAGCTGGACCTTCGGAAGATTCCAACATCAGAAAAAATGTTCAGCGATCTCTTGCCACTGACCTTCAGAACCTTTCCATGGAGCTTCGCAAGAAACAATCAACTTATTTAAAGCGCCTACAGCAGCAAAAAGAGGAAGGTCAAGATCGGATTGACATAGAAATGAATCTCAATGGAAATAGATCGAGACTGGAGGACGATGATTTAGAACACATGGTATTTAATGAGCATCAGATGGCTAAGCTGCGAAAGAGTGAAGCATTCACTGCTGAAAGAGAGAGAGAGATCCAACAAGTTGTAGAATCCGTGAATGAGCTTGCTCAGATCATGAAGGATCTATCAGTACTTGTCATAGACCAGGGCACCATTATTGATAGAATAGATTACAATATTCAAAATGTTGCGACGACGGTTGGGGAGGGCCTTAAGCAACTACAGAAGCCGGGGAATGGGGAAGAGGATTTAGCTTCTTCTCCTTTTGAATTTCAGAGTTCTGAACGGGATTATTTTGTATAG 957 44.2 MASRNRTLIFRKYRDALRSVRVPTSSSPASASPSTSSGAGGPVIELVSSSLLHQNRSYAPLSTEDPGNSSKGAVTVGLPPAWVDVSEEIAANVQRARVKMVELAKAHAKALMPSFGDGKEDQRLIESLTQDITSLIKKSEKGLKRLSVAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQSTYLKRLQQQKEEGQDRIDIEMNLNGNRSRLEDDDLEHMVFNEHQMAKLRKSEAFTAEREREIQQVVESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVATTVGEGLKQLQKPGNGEEDLASSPFEFQSSERDYFV 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43328197 43332425 - Lag0006530.1 Lac6g2561 612330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2561 318 SMART SynN_4 73 188 IPR006011 GO:0016020(InterPro)
Lac6g2561 318 SMART tSNARE_6 228 295 IPR000727 -
Lac6g2561 318 Gene3D - 79 287 - -
Lac6g2561 318 ProSitePatterns Syntaxin / epimorphin family signature. 239 278 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Lac6g2561 318 CDD SNARE_syntaxin16 237 294 - -
Lac6g2561 318 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 233 295 IPR000727 -
Lac6g2561 318 MobiDBLite consensus disorder prediction 21 41 - -
Lac6g2561 318 FunFam Syntaxin-43 79 287 - -
Lac6g2561 318 Coils Coil 184 204 - -
Lac6g2561 318 PANTHER SYNTAXIN 91 294 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Lac6g2561 318 SUPERFAMILY t-snare proteins 78 288 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2493 Lac-Chr4:44239100 Lac6g2561 Lac-Chr6:43328197 6.10E-92 dispersed
Lac6g2561 Lac-Chr6:43328197 Lac3g2333 Lac-Chr3:32360533 1.20E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2561 K08489 - csv:101207998 506.138