Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2567 ATGGATTCCGATCCATTTCTCTCCTTCTTCACTCCCGCCGCCGACCCTGTTCGCCGGAATTCCCTCCGCCGCCCTGTTCTCCGGCGATTCCTCCGGATTCCGGCTCTGATTGAGAAATTTGGAGCTCTGATTGAAGAGTTTTTCCTTTTGAAGTGTCAGCAAAAACCAAAGTTTGGGATCAGTGGGGTTGTGAGAATTGGGATTGCAAAGCTGATGGGGCATTTCTCCACCATGTTCAATGGGCTGGCAAGGTCATTTTCTTTCAAGAAAGGTAGAAATTCCGGGAGTCTAGGTGACGAGGGAGGGCGAGAAGCTGCAAAAGCCATGGTAAAGGATGCGAAAAAGAAAGACTCGATATTGTGCACCTCCGGTGTCCTCAATGGAGAAGGTTCGGATAGTTTTGCTTCGGTTTTCTCGAAAAAAGGCGAAAAAGGTGTGAACCAAGATTGCTGCATTGTATGGGAGGAATTTGGATGCCAAGAAGACATGATATTTTGTGGGATTTTCGACGGGCACGGACCGTGGGGTCATTTTGTTGCAAAGAAAGTAAGAGAATCAATGCCGCCATCTTTGCTGTATCATTGGCAGCAAGGACTTGCTCAAGCTTTTCTTGACCCAGAATTGGATTCAGAAAAGAAGCATCAGCGATTTGATATTTGGAAGCATTCCTATTTAAGAACTTGTGCTGCCATCGATCACGAACTCGAGCAGCACCGTAAGATTGATACAGTTTACAGTGGAACAACTGCCCTGTCCATTGTTAAACAGGGTGAACTAGTCGTTTTGGCCAACGTTGGTGACTCTCGAGCGGTTTTGGCTACTACTTCAGATGATGGAAGTGTAGTACCGGTTCAGCTAACCGTCGATTTCAAACCGAACTTACCTCAGGAGGCTGAGCGGATAATGCAGTGCAACGGGAGGGTGTTTTGTTTAAGTGACGAGCCGGGAGTTCATAGAGTCTGGCTTCCCAACGAGGAATCACCCGGATTGGCGATGTCGAGAGCCTTCGGTGATTATTGCATCAAAGAGTTTGGGCTCATCTCTGTTCCAGAAGTGACATGTAGAAGCATAACCAGCAGAGACCAATTCATTATATTGGCAACTGATGGGGTATGGGATGTTGTCTCCAACCAAGAAGCAGTGGAGATTGTTTCATCAACACCGGATAAAGCGAAATCAGCAAAACGTCTGGTCGAGTGTGCGGTTCGGGCATGGAAACGGAAGAGACGGGGCATTGCAATGGATGATATATCAGCCATTTGCCTCTTCTTCCACACCTCATCAGAGCAAGAAGATCACCTTGTATCCACACCATAG 1317 47.38 MDSDPFLSFFTPAADPVRRNSLRRPVLRRFLRIPALIEKFGALIEEFFLLKCQQKPKFGISGVVRIGIAKLMGHFSTMFNGLARSFSFKKGRNSGSLGDEGGREAAKAMVKDAKKKDSILCTSGVLNGEGSDSFASVFSKKGEKGVNQDCCIVWEEFGCQEDMIFCGIFDGHGPWGHFVAKKVRESMPPSLLYHWQQGLAQAFLDPELDSEKKHQRFDIWKHSYLRTCAAIDHELEQHRKIDTVYSGTTALSIVKQGELVVLANVGDSRAVLATTSDDGSVVPVQLTVDFKPNLPQEAERIMQCNGRVFCLSDEPGVHRVWLPNEESPGLAMSRAFGDYCIKEFGLISVPEVTCRSITSRDQFIILATDGVWDVVSNQEAVEIVSSTPDKAKSAKRLVECAVRAWKRKRRGIAMDDISAICLFFHTSSEQEDHLVSTP 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43380901 43384203 - Lag0006536.1 Lac6g2567 612336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2567 438 ProSiteProfiles PPM-type phosphatase domain profile. 134 424 IPR001932 -
Lac6g2567 438 PANTHER PROTEIN PHOSPHATASE 115 423 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lac6g2567 438 Pfam Protein phosphatase 2C 155 401 IPR001932 -
Lac6g2567 438 FunFam Probable protein phosphatase 2C 34 125 426 - -
Lac6g2567 438 CDD PP2Cc 134 424 IPR001932 -
Lac6g2567 438 SMART PP2C_4 123 422 IPR001932 -
Lac6g2567 438 SUPERFAMILY PP2C-like 132 425 IPR036457 -
Lac6g2567 438 Gene3D - 126 427 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g2944 Lac-Chr3:46915633 Lac6g2567 Lac-Chr6:43380901 2.10E-144 dispersed
Lac6g2567 Lac-Chr6:43380901 Lac9g2142 Lac-Chr9:40949550 6.10E-79 dispersed
Lac11g0889 Lac-Chr11:9618874 Lac6g2567 Lac-Chr6:43380901 3.40E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2567 - - - 0.0