Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2572 ATGTCGACGGAGAGACTGATTCCTACTGGTACAACTCCGTCGGAAGCAGAGCCGCCGAGGTTGGCTTCAGCGTCGCATTCGTTCCGGCAATGTGGAGAACAGGCTAGGGTTTTCGAGGAGCTTCCGATTGCTTCCATTGTATCGGTTTCGCGGCCGGATACTGGAGATATTAGTCCCTTGCTGTTATTTTACACCATTGAAATCCAATACAAACAGTTTAAATGGAGCTTAGTGAAGAAAGCATCGCAAGTTCTTTATTTACATTTTGCATTGAAGAGACGCGCATTTATCGAAGAACTTCATGAGAAACAAGAGCAGGTGAAAGAATGGCTTCACAACTTGGGAATAGTAGACCATATAGCAGTAGTTCATAATGATGACGAGTCTGATGATGGGGCTTTTCCTATGCATGATGAACAAACTACAAGAAACAGGAATGTTCCTTCTGTTGCTGCTTTACCCATCATTAAGCCAGCACTGGGAGGACAGCGGTCCATTTCAGACAAGGCAAAGTTAGCAATGCAAGGTTACTTAAATCACTTTCTTGGGAACTTGGATATTGTAAATTCTCGTGAGGTCTGCAAATTTTTAGAAGTCTCCAAGATGTCATTTGTAAGAGAATGCGGTCCAAAGTTGAAAGAAGGTTACCTAATGGTGAAGCATTTAAAACAACTCACAGGATCTGATTCTAGTATAAAATGTTTTGCATGTCATTGGTGCAGTTGCTGCGATTACAATTGGAAAAAGGTTTGGGCTGTTTTGAAACCAGGTTTCTTGGCCTTGGTTGCTGATCCTATGGACACTAGACTCCTAGATATAATTGTTTTTGATGTGCTACCAACATTAGAAGAAAAGGAGGGATCCCAAGCATGCTTAGCATATCATGTCAAGGAGCGCAATCCCTTACGTCATTCGTTTAAGGTTAGATGCGGAAATGGGAACACGAAGTTCAGATCTACAAGTACTGCCAAAGTCAAAGAATGGGTCTCATCAATTAATGATGCTGGTTTTGGACCCCAAGATGGCTGGTGCCACCCTCATCGCTTTGGTTCTTTTGCTCCTAAGAGAGGTTTGAATGATGATGAAAGCCAAGCTCAGTGGTTCATAGATGGCCGGGCAGCTTTTGAAGCAATCGCTTGCTCTATTGAGGCTGCAAAATCAGAGATTTTCATCACTGGTTGGTGGCTTTGCCCTGAGCTTTATATGCGACGTCCTTTTCACAATCATTCTTCTTCACGGCTTGATGCATTACTGGAAACAAAGGCAAAAGAAGGAGTCAAGATTTACATCTTAATGTATAAGGAGGTTCCTATTGCTCTGAAAATTAACAGTATGTATAGTAAGAAGAGGCTTCTAAATATTCATGAGAATATTAAGGTTCTACGTTCTCCTGATCATATGTCAAGTGGGATTTACTATTGGTCACATCACGAAAAACTTGTCATCATTGATTACCACATTTGCTTCATTGGAGGTTTGGATTTATGCTTTGGCCGCTATGATACAATGGAACATAAAGTGAGTGATTTCCCTCCTTATACATGGCCAGGGAAGGACTATTACAACCCAAGAGAATCTGAACCAAATTCTTGGGAAGACACAATGAAAGATGAATTGGAGCGGGAGAAGTGTCCTCGAATGCCGTGGCATGATGTTCACTGTGCTCTTTGGGGATCTCCATGCCGTGATATTGCTCGACACTTTGTTCAGAGGTGGAACCATGCTAAGAGAAACAAAGCCCCAAATGAAGAAAAAATACCTCTACTTATGCCTCAACATGACATGGTCCTTCCACATTACATGGGAAAAAGCACGGAGTTGAGCTTCGAAAATAAAGACTCAGAGCAAGATCATCAGAAGCAGACTACAGAAGATTTCTTTTCCTCCTTATCACCACAGGAAGATATTCCATTACTTATGCCTCAGGAAGTTGGTGGACTTCCAGATTCTAATATGGAAACAAATAGCCTTTCCATGAATGACAATTTTCTCAATAAGCCCATGGAGATACAAAGAAGTGTTGTGGATTCTTTCCAGGCCTACGATGTTGAACCATTGACCCAATATGAACAAACAAATGGATTGTTAGATGAATTTGGATTTTTGGATGAGTTTGGTGCTTTTGGTCATCCAAGGGAAGATCCTATTGATACTCCGGCATATGTGAAAACTTCAGATGATTGGTTGGAAACTGAACATGAAAGCAATCACGTTGTTGGTATAAATGAGGTCAAAGAAATTGGTCCTCTTACTACTGGCAATTGTCAGGTAATAAGAAGTGTCAGCCAGTGGTCAGCAGGAACGAGCAAACCCGAAGCAAGTATCCATGCTGCTTATTGTTCTGCCATTCAAGAGGCGAAACACTTCATATACATTGAGAACCAGTTTTTTATATCAGGTTTATCAGGGGATGAGACCATACAAAATCGGGTTCTGGAAGCACTATACCAACGTATATTGCTGGCTCATAAAGAACAACAATGTTTTAGAGTTATTGTTGTTTTACCACTCCTACCTGGATTTCAGGGTGGTGTAGACGACAATGGTGCAGCAACGGTCCGAGCCTTGATGCATTGGCAGTATCGAACAATTAGTTGGGAAAAGACTTCGATATTGTACCGTCTCAATCTTTTACTGGGTCCTAAAACAGAAGATTATATTTTGTTTTGTGGCCTTCGATCATATGGCAGACTTTTTGATGGTGGTCCAATTGCCACAAGTCAGGTATATGTGCACAGCAAATTGATGATAATCGATGATTGCATTACCTTTATTGGTTCCTCCAATATTAATGATCGAAGTTTACTTGGATCCAGAGATTCTGAGATTGGGGTAATTATTGAGGACAAAGAGTTTGTTGATTCATCTATGAATGGGAAGCCATGGAAGGCTGGAAAATTCGCTCATAGTCTACGATGCTCCTTGTGGTGTGAGCACCTCGGTCTTCATCTCGGAGAGGTCAATCAAATCATTGATCCGATAGCAGAAGCAACGTACAAAGATTTATGGTTAGCTACGGCAAAGGAAAACACAACAATATATGAAGATGTCTTTTCTTGCATCCCCAATGACAACATAAACTCGAGATCGTCTTTACGCCAAAGTCTGGCCGATTTGAAGGGAAAACTTGGTTATAACACAATAGATTTAGGAATAGCTGCTGAGAAGATAGAAAGCCATGAAAATGGAGAAGTAAAAATGATAGATCCAATGGAGAGACTGAAGTGTATTAGAGGACATCTTGTCTGTTTCCCATTGAAGTTCATGTGGCAAGAAGATCTCAGACCAGGGTTCATTGAGAGTGAGTTTTATGCTGCCCCTCAAGTTTTTCATTAA 3336 41.16 MSTERLIPTGTTPSEAEPPRLASASHSFRQCGEQARVFEELPIASIVSVSRPDTGDISPLLLFYTIEIQYKQFKWSLVKKASQVLYLHFALKRRAFIEELHEKQEQVKEWLHNLGIVDHIAVVHNDDESDDGAFPMHDEQTTRNRNVPSVAALPIIKPALGGQRSISDKAKLAMQGYLNHFLGNLDIVNSREVCKFLEVSKMSFVRECGPKLKEGYLMVKHLKQLTGSDSSIKCFACHWCSCCDYNWKKVWAVLKPGFLALVADPMDTRLLDIIVFDVLPTLEEKEGSQACLAYHVKERNPLRHSFKVRCGNGNTKFRSTSTAKVKEWVSSINDAGFGPQDGWCHPHRFGSFAPKRGLNDDESQAQWFIDGRAAFEAIACSIEAAKSEIFITGWWLCPELYMRRPFHNHSSSRLDALLETKAKEGVKIYILMYKEVPIALKINSMYSKKRLLNIHENIKVLRSPDHMSSGIYYWSHHEKLVIIDYHICFIGGLDLCFGRYDTMEHKVSDFPPYTWPGKDYYNPRESEPNSWEDTMKDELEREKCPRMPWHDVHCALWGSPCRDIARHFVQRWNHAKRNKAPNEEKIPLLMPQHDMVLPHYMGKSTELSFENKDSEQDHQKQTTEDFFSSLSPQEDIPLLMPQEVGGLPDSNMETNSLSMNDNFLNKPMEIQRSVVDSFQAYDVEPLTQYEQTNGLLDEFGFLDEFGAFGHPREDPIDTPAYVKTSDDWLETEHESNHVVGINEVKEIGPLTTGNCQVIRSVSQWSAGTSKPEASIHAAYCSAIQEAKHFIYIENQFFISGLSGDETIQNRVLEALYQRILLAHKEQQCFRVIVVLPLLPGFQGGVDDNGAATVRALMHWQYRTISWEKTSILYRLNLLLGPKTEDYILFCGLRSYGRLFDGGPIATSQVYVHSKLMIIDDCITFIGSSNINDRSLLGSRDSEIGVIIEDKEFVDSSMNGKPWKAGKFAHSLRCSLWCEHLGLHLGEVNQIIDPIAEATYKDLWLATAKENTTIYEDVFSCIPNDNINSRSSLRQSLADLKGKLGYNTIDLGIAAEKIESHENGEVKMIDPMERLKCIRGHLVCFPLKFMWQEDLRPGFIESEFYAAPQVFH 1111
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43414622 43424211 - Lag0006541.1 Lac6g2572 612341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2572 1111 PANTHER PHOSPHOLIPASE D 191 1089 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Lac6g2572 1111 Gene3D - 206 336 IPR011993 -
Lac6g2572 1111 SUPERFAMILY Phospholipase D/nuclease 337 592 - -
Lac6g2572 1111 PIRSF PLD_euk 46 629 IPR016555 GO:0004630(InterPro)|GO:0006654(InterPro)|GO:0035556(InterPro)
Lac6g2572 1111 PIRSF PLD_euk 717 1111 IPR016555 GO:0004630(InterPro)|GO:0006654(InterPro)|GO:0035556(InterPro)
Lac6g2572 1111 CDD PLDc_vPLD1_2_yPLD_like_1 365 509 - -
Lac6g2572 1111 Gene3D Endonuclease Chain A 358 620 - -
Lac6g2572 1111 Gene3D Endonuclease Chain A 723 968 - -
Lac6g2572 1111 SMART PH_update 211 339 IPR001849 -
Lac6g2572 1111 ProSiteProfiles PH domain profile. 210 337 IPR001849 -
Lac6g2572 1111 SUPERFAMILY PH domain-like 212 335 - -
Lac6g2572 1111 SUPERFAMILY Phospholipase D/nuclease 748 955 - -
Lac6g2572 1111 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 907 934 IPR001736 GO:0003824(InterPro)
Lac6g2572 1111 Pfam Phospholipase D Active site motif 474 499 IPR001736 GO:0003824(InterPro)
Lac6g2572 1111 Pfam PLD-like domain 909 954 IPR025202 -
Lac6g2572 1111 CDD PLDc_vPLD1_2_yPLD_like_2 767 951 - -
Lac6g2572 1111 FunFam Phospholipase 741 961 - -
Lac6g2572 1111 CDD PH_PLD 188 335 - -
Lac6g2572 1111 SMART pld_4 907 934 IPR001736 GO:0003824(InterPro)
Lac6g2572 1111 SMART pld_4 472 499 IPR001736 GO:0003824(InterPro)
Lac6g2572 1111 MobiDBLite consensus disorder prediction 1 25 - -
Lac6g2572 1111 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 472 499 IPR001736 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0544 Lac-Chr6:4523124 Lac6g2572 Lac-Chr6:43414622 6.90E-24 dispersed
Lac6g0638 Lac-Chr6:5414661 Lac6g2572 Lac-Chr6:43414622 2.60E-32 dispersed
Lac11g0888 Lac-Chr11:9601803 Lac6g2572 Lac-Chr6:43414622 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2572 K01115 - csv:101220522 2098.94