Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac6g2641 | ATGCAAGATATCTTCGCTTCTGTTCGCCGATCATTGGTGTTTCGCGCTCCCGTTGAGAATGAGGATTCGCATTCCCCTGCAATTGGAGTTGGAGCCCTAGTTGATAGGCTTAATTCCAGCATTCGCAAATCCAGAGTGTTTTCTAGGCACTCTCCCTCCTCCTCGGCTCTGCCTCCGATTCCCAAGGAATGCGAGCCTCCGATTCGATGGCGCAAGGGCGAGTTGATTGGCTGCGGCGCCTTTGGCCGGGTCTATATGGGCATGAATCTTGGCTCTGGCGAGCTTCTCGCTGTCAAACAGGTTCTGATTGCTGCGAATGGCGCTTCGAAGGAGAAAGCGCAGGCTCATGTTAAGGAGCTTGAGGAAGAAGTGAAACTTCTCAAGGATCTTTCTCATCCAAATATTGTTAGATATTTGGGCACGGTTAGGGAGGACGATTCGTTAAATATATTATTGGAATTTGTCCCTGGTGGATCGATATCATCACTTTTGGGGAAATTTGGAGCCTTCCCTGAAGCAGTTATAAGAACATATACAAAACAGTTATTATTGGGATTGGAATACTTACACAAGAACGGTATCATGCACAGGGACATTAAGGGGGCAAATATTCTTGTGGATAACAAGGGTTGCATTAAGCTTGCTGATTTTGGTGCATCAAAACAGGTTGTCGAGCTGGCTACAATTTCAGGTGCAAAATCTATGAAGGGCACTCCATATTGGATGGCTCCTGAAGTAATTCTGCAGACTGGGCATAGTTTCTCTGCTGATATATGGAGTGTTGGATGCACTGTTATTGAGATGGCTACAGGAAAGCCTCCTTGGAGCCAACAGTATCAAGAGGTTGCTGCTCTCTTTCATATAGGCACAACAAAGTCTCATCCACCAATCCCTGAGCAGCTTTCGGTTGAAGCTAAAGATTTTCTGTTGAAATGTTTGCAGAAGGAACCAAACTTAAGACTTGCTGCATCTGAACTCTTAAAGCATCCTTTTGTTACTGGGGAGGAAATAGAATCTCAACTTGTATCACATGATGCATGCACGGAGCCCTTGGAAATCCATTCACCTTTATATACTTCCAACTTTGAAATGAGTAAAACTCCAACACATCCTGGATCAAGTGATATTTGTAATTTGGATAGTCTGAACTGCTCAAAAGTATACACTGCAAACAAATTAGAAAATGATATTTGGGGAACAAACAACAGTGATGATGAAATGTGTCAGATTGATGACAAGGATGATTTTGTGTTAGATGAAGTAAAACCCAGGTCTTCTATTATACCTGATAATTTCAAGAGTTATAACCCAATATGTGAGCCCTCCGATGATGAGGATTGCAAATTTGATAAAAGTCCAGTATTAGACCAAGGAAGCAATTTAGATGAGCAAGCTCTTGCACCTGGCAGCTGTTCTGGAGCTTTTGATGATGACCAAAACTTCTCATTTCCTAGTGGGCGATCACTTTCTGAAGATGAGGATGAGCTCACTGAATCAAAAATTAAAGCTTTCTTGGATGAAAAGGCTCTTGAATTGAAGAAACTGCAGTCACCGTTATATGAGGAGTTCTACAATAGTTTGAATACATCCTGCTCTCCAGTTTTTATCGAGAGTAAACAAGATGAAAGTACTCCTAAATACCTGAAATTGCCCCCAAAAAGTCGGTCACCAAGTCGAAGTCCTGGCAATCCATCCCCAGCACTTGATGCTTTTGGCACTGGGAGCCCAGGGAGTGGTAGCAGGGGTAATGCAGATCAGAGGTCACAACTCAACGATTGGAAAGGACTTCTAGTTGATGGTCAGTCAGAAGCTGGTAGCCCAAGTAAGCATTATTCTGAAATCCAGAGGAAGTGGAAAGAAGAGCTTGATCAGGAGCTTGAGAGAAAACGAGAGATGATGCGTCAAGCTAGCGCGGGAGGCAAAACTTCATCTCCAAAGGACAAAGCCATGGGCAGGCAGAGAGAGCGGACAAGATTTGCATCTCCATTCCGGGATGATGCGTCGAGTGCTGGGAGGGAAAACAGGGAAAACTTCATCTCCTGA | 2043 | 44.0 | MQDIFASVRRSLVFRAPVENEDSHSPAIGVGALVDRLNSSIRKSRVFSRHSPSSSALPPIPKECEPPIRWRKGELIGCGAFGRVYMGMNLGSGELLAVKQVLIAANGASKEKAQAHVKELEEEVKLLKDLSHPNIVRYLGTVREDDSLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPEQLSVEAKDFLLKCLQKEPNLRLAASELLKHPFVTGEEIESQLVSHDACTEPLEIHSPLYTSNFEMSKTPTHPGSSDICNLDSLNCSKVYTANKLENDIWGTNNSDDEMCQIDDKDDFVLDEVKPRSSIIPDNFKSYNPICEPSDDEDCKFDKSPVLDQGSNLDEQALAPGSCSGAFDDDQNFSFPSGRSLSEDEDELTESKIKAFLDEKALELKKLQSPLYEEFYNSLNTSCSPVFIESKQDESTPKYLKLPPKSRSPSRSPGNPSPALDAFGTGSPGSGSRGNADQRSQLNDWKGLLVDGQSEAGSPSKHYSEIQRKWKEELDQELERKREMMRQASAGGKTSSPKDKAMGRQRERTRFASPFRDDASSAGRENRENFIS | 680 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 44160082 | 44164952 | - | Lag0006610.1 | Lac6g2641 | 612410 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac6g2641 | 680 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 46 | 334 | IPR050538 | - | |
Lac6g2641 | 680 | Coils | Coil | 615 | 639 | - | - | |
Lac6g2641 | 680 | FunFam | Serine/threonine-protein kinase STE11 | 67 | 160 | - | - | |
Lac6g2641 | 680 | MobiDBLite | consensus disorder prediction | 610 | 635 | - | - | |
Lac6g2641 | 680 | MobiDBLite | consensus disorder prediction | 539 | 680 | - | - | |
Lac6g2641 | 680 | MobiDBLite | consensus disorder prediction | 576 | 590 | - | - | |
Lac6g2641 | 680 | Gene3D | Transferase(Phosphotransferase) domain 1 | 69 | 359 | - | - | |
Lac6g2641 | 680 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 194 | 206 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac6g2641 | 680 | SMART | serkin_6 | 70 | 332 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac6g2641 | 680 | Coils | Coil | 103 | 130 | - | - | |
Lac6g2641 | 680 | Pfam | Protein kinase domain | 71 | 332 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac6g2641 | 680 | FunFam | Mitogen-activated protein kinase kinase kinase 2 | 69 | 361 | - | - | |
Lac6g2641 | 680 | ProSiteProfiles | Protein kinase domain profile. | 70 | 332 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac6g2641 | 680 | SUPERFAMILY | Protein kinase-like (PK-like) | 69 | 373 | IPR011009 | - | |
Lac6g2641 | 680 | ProSitePatterns | Protein kinases ATP-binding region signature. | 76 | 99 | IPR017441 | GO:0005524(InterPro) | |
Lac6g2641 | 680 | MobiDBLite | consensus disorder prediction | 647 | 680 | - | - | |
Lac6g2641 | 680 | CDD | STKc_MAPKKK | 69 | 332 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g0043 | Lac-Chr11:370305 | Lac6g2641 | Lac-Chr6:44160082 | 5.50E-71 | dispersed | |
Lac12g2311 | Lac-Chr12:40265493 | Lac6g2641 | Lac-Chr6:44160082 | 9.10E-210 | dispersed | |
Lac6g2641 | Lac-Chr6:44160082 | Lac8g1900 | Lac-Chr8:37256127 | 3.80E-51 | dispersed | |
Lac6g2641 | Lac-Chr6:44160082 | Lac5g2947 | Lac-Chr5:47502179 | 1.70E-72 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86279 | PF00069 | Pkinase | 1.60E-71 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac6g2641 | K20606 | - | csv:101209358 | 1181.39 |