Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2641 ATGCAAGATATCTTCGCTTCTGTTCGCCGATCATTGGTGTTTCGCGCTCCCGTTGAGAATGAGGATTCGCATTCCCCTGCAATTGGAGTTGGAGCCCTAGTTGATAGGCTTAATTCCAGCATTCGCAAATCCAGAGTGTTTTCTAGGCACTCTCCCTCCTCCTCGGCTCTGCCTCCGATTCCCAAGGAATGCGAGCCTCCGATTCGATGGCGCAAGGGCGAGTTGATTGGCTGCGGCGCCTTTGGCCGGGTCTATATGGGCATGAATCTTGGCTCTGGCGAGCTTCTCGCTGTCAAACAGGTTCTGATTGCTGCGAATGGCGCTTCGAAGGAGAAAGCGCAGGCTCATGTTAAGGAGCTTGAGGAAGAAGTGAAACTTCTCAAGGATCTTTCTCATCCAAATATTGTTAGATATTTGGGCACGGTTAGGGAGGACGATTCGTTAAATATATTATTGGAATTTGTCCCTGGTGGATCGATATCATCACTTTTGGGGAAATTTGGAGCCTTCCCTGAAGCAGTTATAAGAACATATACAAAACAGTTATTATTGGGATTGGAATACTTACACAAGAACGGTATCATGCACAGGGACATTAAGGGGGCAAATATTCTTGTGGATAACAAGGGTTGCATTAAGCTTGCTGATTTTGGTGCATCAAAACAGGTTGTCGAGCTGGCTACAATTTCAGGTGCAAAATCTATGAAGGGCACTCCATATTGGATGGCTCCTGAAGTAATTCTGCAGACTGGGCATAGTTTCTCTGCTGATATATGGAGTGTTGGATGCACTGTTATTGAGATGGCTACAGGAAAGCCTCCTTGGAGCCAACAGTATCAAGAGGTTGCTGCTCTCTTTCATATAGGCACAACAAAGTCTCATCCACCAATCCCTGAGCAGCTTTCGGTTGAAGCTAAAGATTTTCTGTTGAAATGTTTGCAGAAGGAACCAAACTTAAGACTTGCTGCATCTGAACTCTTAAAGCATCCTTTTGTTACTGGGGAGGAAATAGAATCTCAACTTGTATCACATGATGCATGCACGGAGCCCTTGGAAATCCATTCACCTTTATATACTTCCAACTTTGAAATGAGTAAAACTCCAACACATCCTGGATCAAGTGATATTTGTAATTTGGATAGTCTGAACTGCTCAAAAGTATACACTGCAAACAAATTAGAAAATGATATTTGGGGAACAAACAACAGTGATGATGAAATGTGTCAGATTGATGACAAGGATGATTTTGTGTTAGATGAAGTAAAACCCAGGTCTTCTATTATACCTGATAATTTCAAGAGTTATAACCCAATATGTGAGCCCTCCGATGATGAGGATTGCAAATTTGATAAAAGTCCAGTATTAGACCAAGGAAGCAATTTAGATGAGCAAGCTCTTGCACCTGGCAGCTGTTCTGGAGCTTTTGATGATGACCAAAACTTCTCATTTCCTAGTGGGCGATCACTTTCTGAAGATGAGGATGAGCTCACTGAATCAAAAATTAAAGCTTTCTTGGATGAAAAGGCTCTTGAATTGAAGAAACTGCAGTCACCGTTATATGAGGAGTTCTACAATAGTTTGAATACATCCTGCTCTCCAGTTTTTATCGAGAGTAAACAAGATGAAAGTACTCCTAAATACCTGAAATTGCCCCCAAAAAGTCGGTCACCAAGTCGAAGTCCTGGCAATCCATCCCCAGCACTTGATGCTTTTGGCACTGGGAGCCCAGGGAGTGGTAGCAGGGGTAATGCAGATCAGAGGTCACAACTCAACGATTGGAAAGGACTTCTAGTTGATGGTCAGTCAGAAGCTGGTAGCCCAAGTAAGCATTATTCTGAAATCCAGAGGAAGTGGAAAGAAGAGCTTGATCAGGAGCTTGAGAGAAAACGAGAGATGATGCGTCAAGCTAGCGCGGGAGGCAAAACTTCATCTCCAAAGGACAAAGCCATGGGCAGGCAGAGAGAGCGGACAAGATTTGCATCTCCATTCCGGGATGATGCGTCGAGTGCTGGGAGGGAAAACAGGGAAAACTTCATCTCCTGA 2043 44.0 MQDIFASVRRSLVFRAPVENEDSHSPAIGVGALVDRLNSSIRKSRVFSRHSPSSSALPPIPKECEPPIRWRKGELIGCGAFGRVYMGMNLGSGELLAVKQVLIAANGASKEKAQAHVKELEEEVKLLKDLSHPNIVRYLGTVREDDSLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPEQLSVEAKDFLLKCLQKEPNLRLAASELLKHPFVTGEEIESQLVSHDACTEPLEIHSPLYTSNFEMSKTPTHPGSSDICNLDSLNCSKVYTANKLENDIWGTNNSDDEMCQIDDKDDFVLDEVKPRSSIIPDNFKSYNPICEPSDDEDCKFDKSPVLDQGSNLDEQALAPGSCSGAFDDDQNFSFPSGRSLSEDEDELTESKIKAFLDEKALELKKLQSPLYEEFYNSLNTSCSPVFIESKQDESTPKYLKLPPKSRSPSRSPGNPSPALDAFGTGSPGSGSRGNADQRSQLNDWKGLLVDGQSEAGSPSKHYSEIQRKWKEELDQELERKREMMRQASAGGKTSSPKDKAMGRQRERTRFASPFRDDASSAGRENRENFIS 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44160082 44164952 - Lag0006610.1 Lac6g2641 612410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2641 680 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 46 334 IPR050538 -
Lac6g2641 680 Coils Coil 615 639 - -
Lac6g2641 680 FunFam Serine/threonine-protein kinase STE11 67 160 - -
Lac6g2641 680 MobiDBLite consensus disorder prediction 610 635 - -
Lac6g2641 680 MobiDBLite consensus disorder prediction 539 680 - -
Lac6g2641 680 MobiDBLite consensus disorder prediction 576 590 - -
Lac6g2641 680 Gene3D Transferase(Phosphotransferase) domain 1 69 359 - -
Lac6g2641 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g2641 680 SMART serkin_6 70 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g2641 680 Coils Coil 103 130 - -
Lac6g2641 680 Pfam Protein kinase domain 71 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g2641 680 FunFam Mitogen-activated protein kinase kinase kinase 2 69 361 - -
Lac6g2641 680 ProSiteProfiles Protein kinase domain profile. 70 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g2641 680 SUPERFAMILY Protein kinase-like (PK-like) 69 373 IPR011009 -
Lac6g2641 680 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524(InterPro)
Lac6g2641 680 MobiDBLite consensus disorder prediction 647 680 - -
Lac6g2641 680 CDD STKc_MAPKKK 69 332 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0043 Lac-Chr11:370305 Lac6g2641 Lac-Chr6:44160082 5.50E-71 dispersed
Lac12g2311 Lac-Chr12:40265493 Lac6g2641 Lac-Chr6:44160082 9.10E-210 dispersed
Lac6g2641 Lac-Chr6:44160082 Lac8g1900 Lac-Chr8:37256127 3.80E-51 dispersed
Lac6g2641 Lac-Chr6:44160082 Lac5g2947 Lac-Chr5:47502179 1.70E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86279 PF00069 Pkinase 1.60E-71 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2641 K20606 - csv:101209358 1181.39