Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2660 ATGGCTTTAGAGGCTGTTGTTTTTCCTCAAGATCCATTGAGTTACAATGGCAGCAAAGATCTTTACAGCTTGTTTGGAGGAGGGATTTGGACAAATGGAGGCTTTGAATATCCTCAAATCCCTCATGATTTTCCCGAGAACCAAACAGAAAATTTCCCATTTAGCGATTGGAACTCCTCTTCCTCTGTTTTGATCCCTAATCCTTCCCCTGAAGCTGCCATTTCCAGAAATGGGTTGATCTTCAACGACCCAAATCCGCCATTGGAGGCCGAATCAAGAACTCCAAATCCAATCCGGCCCAGAAAACGAAGACCCAAATCCCGCAAGAACAAAGAGGAAATCGAAAATCAGAGAATGACTCACATCGCTGTCGAACGAAATCGAAGAAAACAGATGAATGAGTATCTCTCTGTTCTTCGATCTTTAATGCCAGATTCTTATGTTCAAAGGGGAGATCAAGCTTCAATCATTGGAGGAGCAATTAATTTTGTGAAGGAGCTTGAACAGCAAGTTCAATTTCTGTCAACAGCTCAAATGGAATCAAAAGGGAACAACAAAAATCATAATAATTCTTCAGAAGGCTGTTCTTCTTCTTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACAAATCCCTTTCTCTGAGTTCTTCAGCTTCCCTCAGTTCAAAGCAATGGAGGGTTGTTCTGTAAGGGAGAATGAAACTCAGAGCTCCTCCATTGCTGACATTGAAGTAACAATGGTGGAAAATCATGCAAATTTGAAAATCAGGTCCAAGAAAAGGCCCAAACAAGTCTTGAAAATTGTTGCTGGCTTGCATTCCCTTTCCCTCTCTGTTCTTCATCTCAATATCTCAACCATCAACCAGATTGTTCTTTACTGTCTCAGTGTCAAGGTTGAAGATGATTGCAAGCTGACTTCTGTTGATGAAATTGCTTCTGCTCTGCATCAGTTGCTCAGTAGAATAGAAGAAGATTCACTTATGAACTGA 996 40.86 MALEAVVFPQDPLSYNGSKDLYSLFGGGIWTNGGFEYPQIPHDFPENQTENFPFSDWNSSSSVLIPNPSPEAAISRNGLIFNDPNPPLEAESRTPNPIRPRKRRPKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQQVQFLSTAQMESKGNNKNHNNSSEGCSSSSSSSSSSSSSSSSQIPFSEFFSFPQFKAMEGCSVRENETQSSSIADIEVTMVENHANLKIRSKKRPKQVLKIVAGLHSLSLSVLHLNISTINQIVLYCLSVKVEDDCKLTSVDEIASALHQLLSRIEEDSLMN 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44317132 44318314 + Lag0006629.1 Lac6g2660 612429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2660 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 167 IPR011598 GO:0046983(InterPro)
Lac6g2660 331 SMART finulus 122 173 IPR011598 GO:0046983(InterPro)
Lac6g2660 331 MobiDBLite consensus disorder prediction 179 208 - -
Lac6g2660 331 MobiDBLite consensus disorder prediction 82 120 - -
Lac6g2660 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 177 IPR036638 GO:0046983(InterPro)
Lac6g2660 331 Gene3D - 107 197 IPR036638 GO:0046983(InterPro)
Lac6g2660 331 PANTHER MAX DIMERIZATION, MAD 2 323 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac6g2660 331 Pfam Helix-loop-helix DNA-binding domain 117 168 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g2590 Lac-Chr3:39328827 Lac6g2660 Lac-Chr6:44317132 3.40E-64 dispersed
Lac5g1897 Lac-Chr5:37325760 Lac6g2660 Lac-Chr6:44317132 1.70E-51 dispersed
Lac6g0931 Lac-Chr6:8261699 Lac6g2660 Lac-Chr6:44317132 3.70E-59 dispersed
Lac6g2660 Lac-Chr6:44317132 Lac7g0017 Lac-Chr7:145836 2.20E-41 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24070 PF00010 HLH 4.60E-10 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2660 - - - 0.0