Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2714 ATGAATCAATATAGAAGTGTTGTTGAGTTTATCAGGTCTGAGCTTATACCCAGCCCACAAAGGGGGGGAAAAAGGCACCAAGATTCTCAGACTTTCGCCATTCATATTCACTTCGAGAGAAGCAATGGTTGCTCAGAGAAAGGGAGCATCGCGGGTTTCCGAGGACCCGAGGAGCTGGCAAGAGTTTCGTTGCAGGCTGTTCTTCTTGCCGACAGCTTTACCACTAAGTTTCGCCCCATAACGCTTGAACGCCCAAAGGTATTATTGCCGCTGGTAAACGTCCCGATGATTAATTATACTTTATCTTGGCTCGAATCGGCTGGTGTCGAAGAGGTGTTTGTTTTTTGCTGTGCTAATTCAAAGCAAGTAATTGATTATTTGGAGAACTCTGAGTGGGTATCCCTACCAGACTTTGCAGTCACAACCATAGAGTCGCACAACTCCATCAGTGCTGGAGACGCCTTGCGTTTAATCTATGAAAGAAATGTGATACATGGTGATTTTGTACTTATCACTGGAGACACCATAAGCAACATGTCACTTACGCAAGCTCTTCAAGAACACAAAGAGAGAAAGAAGAAAGATAGTAATGCTGTAATGACCATGGTTGTCAAACGGTCAAAGCCTTCTCCAATCACACACCAATCTCGGCTTGGCACTGATGAGTTGTTTATGGCAATTGATCATAATACTAAGCAGCTCTTGTACTATGAGGATAAGGCTGACAATTCAAAAGGAATTATACATCTTGACAAGACATTGCTAATGGATAATCCTTCCATATCAGTTCATAACGACATGCAGGATTGTTACATAGACATATGCTCCCCAGAAGTACTCAGCCTGTTTACTGACAATTTTGACTACCAACATCTACGTCGTCATTTTGTCAAGGGATTGCTCTTAGATGATATCATGGGTTACAAGATTTACACACACGAAATTTGCTCAAGCTATGCAGCTAGAATTGATAATTATCGAAGCTATGACACTGTTAGTAAGGACATAATACAGAGGTGGACATATCCGCTGGTACCAGACGTTAAATTCTTTGGGAATTCTGCTTATAAACTTGAAAGGCAGGGAATGTATAGAGCATCAGAAATACTGCAGGCACGTTCTGCACAGGTTGGTCCATTTACTGTTATTGGAGATAACAGCACAATTGGCGGCAACACCAAAATTACAAATTCAATTATTGGGCAAGGTTGTAGCATTGGATCGAATGTTACAATTGAAGGCTCTTATATATGGGACAACGTCTCTATTGAAGATGGCTGTAAACTTAGTCATGCTATCGTATGTGATGGAGTGATTATAAAGTCCGGAGCTGAACTGGAACCTGGTGTAATTTTGTCTTTCAAGGTAATGTTCCTTCTGTTTGGTTATTAA 1392 41.31 MNQYRSVVEFIRSELIPSPQRGGKRHQDSQTFAIHIHFERSNGCSEKGSIAGFRGPEELARVSLQAVLLADSFTTKFRPITLERPKVLLPLVNVPMINYTLSWLESAGVEEVFVFCCANSKQVIDYLENSEWVSLPDFAVTTIESHNSISAGDALRLIYERNVIHGDFVLITGDTISNMSLTQALQEHKERKKKDSNAVMTMVVKRSKPSPITHQSRLGTDELFMAIDHNTKQLLYYEDKADNSKGIIHLDKTLLMDNPSISVHNDMQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIYTHEICSSYAARIDNYRSYDTVSKDIIQRWTYPLVPDVKFFGNSAYKLERQGMYRASEILQARSAQVGPFTVIGDNSTIGGNTKITNSIIGQGCSIGSNVTIEGSYIWDNVSIEDGCKLSHAIVCDGVIIKSGAELEPGVILSFKVMFLLFGY 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44903326 44910878 + Lag0006683.1 Lac6g2714 612483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2714 463 Pfam Bacterial transferase hexapeptide (six repeats) 381 414 IPR001451 -
Lac6g2714 463 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 57 344 IPR029044 -
Lac6g2714 463 FunFam Translation initiation factor eIF-2B subunit epsilon 54 344 - -
Lac6g2714 463 Pfam Nucleotidyl transferase 66 209 IPR005835 GO:0009058(InterPro)
Lac6g2714 463 Gene3D Hexapeptide repeat proteins 360 457 - -
Lac6g2714 463 CDD eIF-2B_epsilon_N 64 280 IPR035543 -
Lac6g2714 463 CDD LbH_eIF2B_epsilon 382 456 - -
Lac6g2714 463 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 61 457 IPR051956 GO:0003743(PANTHER)|GO:0005085(PANTHER)|GO:0005851(PANTHER)|GO:0031369(PANTHER)
Lac6g2714 463 SUPERFAMILY Trimeric LpxA-like enzymes 308 452 IPR011004 -
Lac6g2714 463 SUPERFAMILY Nucleotide-diphospho-sugar transferases 63 410 IPR029044 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2714 K03240 - csv:101217025 772.311