Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2719 ATGGGATGTATAAGTAGCCGAGAGGTAGCTTCCAGAAACTTAGCAGATTCAGAGGATAAGAAGGAGAAGAATTCTGAATGTGGTGATGATTTGGAAAGGAAGGAATCTGATGTGGCTGTTGTTGATGTTACTCAGAAGGAAGGGCATGGCCATGGGGCTCAGCCTTTGACAAAAGAGCAGAGAAGAAAGTCGAAACCTAACCCCAGATTGAGTAATTTGCCAAAGCAATCACAGGGGGAGCAGGTGGCGGCTGGATGGCCTTCTTGGCTCACAGCAGTTTGTGGGGAGGCACTCAGTGGCTGGGTTCCGAGGAAGGCTGATACATTTGAGAAGATTGATAAGATTGGACAAGGAACATACAGTAATGTGTACAAAGCAAAAGATATATTGACCGGTAAAGTTGTTGCGCTGAAGAAGGTTCGATTTGACAATTTAGAGCCAGAAAGTGTAAGATTTATGGCCAGAGAGATCCTCATTTTGCGACGCCTAGATCATCCTAATGTTGTAAAGTTAGAGGGTTTGGTTACATCAAGGATGTCATGTAGTTTGTACCTTGTGTTTGAGTACATGGAGCATGATTTAGCTGGACTTGCTGCAAATCCATCCATCAAATTTACAGAGCCTCAGGTTAAGTGTTTCATGCAACAACTGTTATCAGGACTCGAGCATTGTCACAGCCATAGGGTGCTTCATCGTGATATTAAGGGTTCAAATCTTCTTATTGATGGTGGAGGGATGCTTAAGATTGCTGACTTTGGACTAGCTACTTTCTTTGATCCAAAGCACAAGCACCCATTGACTAATCGTGTTGTTACCTTATGGTATCGATCTCCTGAGCTTCTACTAGGTGCAACTCACTATGGTGTAGGCATCGACCTTTGGAGTGCAGGTTGTATTTTAGCAGAGTTATTAGCTGGGCGGCCCATAATGCCTGGCCGTACAGAGGTTGAGCAATTACATAAGATATTCAAGCTATGTGGCTCACCTTCAGATGAATATTTGAAGAGAGCGAAGTTGCCCAATGCAGCTTTATTTAGGCCCCGAGAACCTTATAAGAGATGTATAAAAGAGACTTTTCAAGATTTCCCACCATCGTCATTTCCTCTTATAGATACGCTTCTTGCAATTGATCCTGCTGAGAGAATGACAGCTACAGATGCATTAAAGAGTGAGTTCTTCACTACAGAACCTTATGCATGCGAACCTTCCAGCCTCCCCAAATATCCACCCAGTAAGGAGATGGATGCTAAACGGCGAGATGATGAAGCGCGAAGACAAAAAGCAGCAAGTAAATTGCAGAATGATCGTGTGAAGAAGACGCGCACACGTAACCGTGCTGGTAGGACCATTCCTATTCAAGGAGCCAATGCAGAACTTCAATCAAATATCGATAGACGGCGTTTAATTACTCATGCAAATGCAAAGAGCAAAAGCGAAAAGTTTCCCCCTCCGCATCAGGATGGCGCACTCGGATTCACATTGGGATACTCACGTCATATTGATCCAGCTGTAGTTCCTTCTGATGTTCCATTTAGTTCCACCTCGTTCGGCTATCCAAACGAATTCGACCGAGCCTGGTCCGGTCCATTGGTTGAGTCTTCTGACATTGGTGCTCAGAGGCAGAAGCATTTGGGAGGTGATGCAAGAGAGCAACAATCAAACCAATCTTCAGTTAAAGGAAAAAAGGCAGCATGA 1695 44.37 MGCISSREVASRNLADSEDKKEKNSECGDDLERKESDVAVVDVTQKEGHGHGAQPLTKEQRRKSKPNPRLSNLPKQSQGEQVAAGWPSWLTAVCGEALSGWVPRKADTFEKIDKIGQGTYSNVYKAKDILTGKVVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTEPQVKCFMQQLLSGLEHCHSHRVLHRDIKGSNLLIDGGGMLKIADFGLATFFDPKHKHPLTNRVVTLWYRSPELLLGATHYGVGIDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPSDEYLKRAKLPNAALFRPREPYKRCIKETFQDFPPSSFPLIDTLLAIDPAERMTATDALKSEFFTTEPYACEPSSLPKYPPSKEMDAKRRDDEARRQKAASKLQNDRVKKTRTRNRAGRTIPIQGANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHIDPAVVPSDVPFSSTSFGYPNEFDRAWSGPLVESSDIGAQRQKHLGGDAREQQSNQSSVKGKKAA 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44960971 44965213 - Lag0006688.1 Lac6g2719 612488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2719 564 MobiDBLite consensus disorder prediction 67 81 - -
Lac6g2719 564 MobiDBLite consensus disorder prediction 473 493 - -
Lac6g2719 564 MobiDBLite consensus disorder prediction 12 44 - -
Lac6g2719 564 CDD STKc_CDK9_like 109 393 - -
Lac6g2719 564 MobiDBLite consensus disorder prediction 548 564 - -
Lac6g2719 564 ProSiteProfiles Protein kinase domain profile. 109 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g2719 564 Gene3D Phosphorylase Kinase; domain 1 96 191 - -
Lac6g2719 564 MobiDBLite consensus disorder prediction 1 81 - -
Lac6g2719 564 Pfam Protein kinase domain 109 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g2719 564 PANTHER CELL DIVISION PROTEIN KINASE 108 393 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Lac6g2719 564 MobiDBLite consensus disorder prediction 411 440 - -
Lac6g2719 564 MobiDBLite consensus disorder prediction 533 564 - -
Lac6g2719 564 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g2719 564 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524(InterPro)
Lac6g2719 564 MobiDBLite consensus disorder prediction 401 446 - -
Lac6g2719 564 MobiDBLite consensus disorder prediction 52 66 - -
Lac6g2719 564 Gene3D Transferase(Phosphotransferase) domain 1 192 433 - -
Lac6g2719 564 FunFam probable serine/threonine-protein kinase At1g54610 96 191 - -
Lac6g2719 564 SUPERFAMILY Protein kinase-like (PK-like) 103 398 IPR011009 -
Lac6g2719 564 FunFam probable serine/threonine-protein kinase At1g54610 192 433 - -
Lac6g2719 564 SMART serkin_6 109 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g2719 Lac-Chr6:44960971 Lac7g0838 Lac-Chr7:6765851 7.60E-223 dispersed
Lac6g2719 Lac-Chr6:44960971 Lac3g2293 Lac-Chr3:31237655 6.60E-243 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86283 PF00069 Pkinase 2.30E-67 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2719 K08819 - csv:101217497 1075.08