Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2741 ATGGATGGTCTCTCAGATCTTGAGCCTGATTGCTCTGAATTTGTTGAAGTTGATCCCACTGGCAGATATGGCAGATACAATGAAATTTTGGGAAAAGGAGCTTCAAAAACAGTTTACAGAGCATTTGATGAGTATGAAGGAATTGAGGTCGCTTGGAATCAAGTGAAACTCTATGATTTCTTGCAAAGTCCTGAAGATCTGGAAAGACTTTACTGTGAGATTCATCTTTTGAAGACATTGAAGCACAGAAATATTATGAAATTCTACACTTCTTGGGTTGATATTGCCAATAGAAACATCAATTTTGTTACTGAAATGTTCACTTCTGGCACTCTTAGACAGTATAGGCTGAAGCATAAGAGAGTTAATATTAGAGCAGTGAAGCATTGGTGCAGGCAGATTTTGAGGGGGCTTCATTATTTGCATAGCCATGAGCCTCCTGTAATCCATAGAGATCTCAAGTGTGACAATATCTTTGTTAATGGGAATCAAGGGGAAGTTAAGATTGGTGATCTTGGACTTGCAGCAATCCTCAGGAAATCTCATGCTGATCATTGTGTGGGGACACCAGAGTTCATGGCTCCAGAAGTGTATGCAGAGGCATATAACGAGTTAGTTGATATTTACTCATTTGGAATGTGCATTCTGGAGATGATAACTTTCGAATATCCATACAGCGAATGCACTCATCCCGCTCAGATCTACAAGAAAGTCGTATCCGATCCCGAAGTGCGGCAGTTCATCGACAAGTGTTTGGCGACGGTTTCATTTAGGCTCTCGGCAGCAGAGCTTTTGAGTGACCCTTTTCTTCAAATTGATAATGGTGAATATGATCTAAGACCTGTCGATTACGGGAGAGGATTGGACGACGTTTGCCCTCTTATAAGACAGCCTTATCTAGAACTTCATAGAAGTGATAGCTCTTTTTGTAATGGATATCCATATGATTATAGTTTTGAAGCTTCAAGTGAATCAGGTTATCATCCAATTGATCATGAAACCAATGGAATTGAACTTTTTGAGTATTGTGAAGGCGAACATTCTGAAGATGTAGATATTGGCATTAAAGGGAAGATGAGAGAAGGTGGTGCCATCTTCTTAAGACTCAGAATTGCAGATAAAGAAGGGCGTATCAGGAACATCTATTTCCCATTTGATGTCGAGACGGATACAGCATTAAGTGTTGCAACAGAAATGGTTGCAGAGCTAGATATTACAGATCAAGACGTGACCAGAATTGCAGACATGATCGACGGAGAAATCGCTTCCTTGGTGCCTGATTGGAGGCCGGGTCCAGGAATTGAGGAAACGCCACGCTTTGCAAATCAAAGCTATTGTCATAATTGTTCGACTACTCCTTACAACAATGCTTCAAATGGTCATTTGTTTAGAAATCCTGATGGAAAGAACTCAGAGGTTCCTCAATGCTGTGGACAACGTTATGCGTCAATGCACGGTCGCTTTGAGGAGATAATGTATCAAGCTGACGAGCCCGAGCATCATCCAACAGAGGGTGCACCGAATGTGTCGAGCCATTCGGATTGCCTGAATTATCCTGAAATATGGGGACACCATGAAAGCCGTGAACTTAGTTCAATGAGCTCAAGACAGAGCCATTCGGATGAAGATTACGAGAAAACAGATCGATCGGTTACGGTCCCGGACACGAAAGAAATGATAATGGAAAGTAAAACTGCTCCTAATACGAGAACAACGCTTAGGAGCCTAATGGATTCCCTTTCTTTCTCAGAAACCCCTTCATTATATGGACCTCCAGATATTTATGAGACTGATGTCCAGCAAGAAATGAGATGGATCAAGGCAAAATACCAAATAGAATTAAGCAAGCTCAGAGATCAACAGTTGAGCCTTTCGTCAAAATCTTCAAGTTATGAAGACAGACAACAAGAAATGGAAAATGGGTCACGGCAAGGCAACCACAACCAAATCCTCAACAGGGCTGCTCGAGACACGAACCGTAGTACCGATAGCCATGTTTATATCAATGATAGCAGTTGTAGTACAGACGCCGACAGGGCCCGAAATCACAAGGCCATGGAGTCCCCTATTGTGGATAAAGTAGTCACTGCTAAAAATGCCTGCACTGGTTCATTGCTTCCAAGCTCTCTTCACAGAGCAATCTCTCTCCCAGTTGATGCTGTTCATATATAA 2172 41.99 MDGLSDLEPDCSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDIANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILRGLHYLHSHEPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHADHCVGTPEFMAPEVYAEAYNELVDIYSFGMCILEMITFEYPYSECTHPAQIYKKVVSDPEVRQFIDKCLATVSFRLSAAELLSDPFLQIDNGEYDLRPVDYGRGLDDVCPLIRQPYLELHRSDSSFCNGYPYDYSFEASSESGYHPIDHETNGIELFEYCEGEHSEDVDIGIKGKMREGGAIFLRLRIADKEGRIRNIYFPFDVETDTALSVATEMVAELDITDQDVTRIADMIDGEIASLVPDWRPGPGIEETPRFANQSYCHNCSTTPYNNASNGHLFRNPDGKNSEVPQCCGQRYASMHGRFEEIMYQADEPEHHPTEGAPNVSSHSDCLNYPEIWGHHESRELSSMSSRQSHSDEDYEKTDRSVTVPDTKEMIMESKTAPNTRTTLRSLMDSLSFSETPSLYGPPDIYETDVQQEMRWIKAKYQIELSKLRDQQLSLSSKSSSYEDRQQEMENGSRQGNHNQILNRAARDTNRSTDSHVYINDSSCSTDADRARNHKAMESPIVDKVVTAKNACTGSLLPSSLHRAISLPVDAVHI 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45131437 45134823 - Lag0006710.1 Lac6g2741 612510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2741 723 SUPERFAMILY Protein kinase-like (PK-like) 27 271 IPR011009 -
Lac6g2741 723 SMART serkin_6 24 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g2741 723 CDD STKc_WNK 22 270 - -
Lac6g2741 723 Gene3D Phosphorylase Kinase; domain 1 9 105 - -
Lac6g2741 723 FunFam probable serine/threonine-protein kinase WNK9 107 275 - -
Lac6g2741 723 FunFam probable serine/threonine-protein kinase WNK9 363 447 - -
Lac6g2741 723 ProSiteProfiles Protein kinase domain profile. 24 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g2741 723 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g2741 723 MobiDBLite consensus disorder prediction 619 648 - -
Lac6g2741 723 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 13 621 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Lac6g2741 723 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 366 421 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Lac6g2741 723 Gene3D Transferase(Phosphotransferase) domain 1 107 275 - -
Lac6g2741 723 MobiDBLite consensus disorder prediction 528 551 - -
Lac6g2741 723 Gene3D - 363 429 - -
Lac6g2741 723 Pfam Protein kinase domain 27 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g2741 723 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g2189 Lac-Chr3:28432246 Lac6g2741 Lac-Chr6:45131437 1.30E-204 dispersed
Lac5g0974 Lac-Chr5:14935619 Lac6g2741 Lac-Chr6:45131437 2.70E-94 dispersed
Lac6g2741 Lac-Chr6:45131437 Lac9g2333 Lac-Chr9:42656667 6.50E-126 dispersed
Lac1g0885 Lac-Chr1:23196798 Lac6g2741 Lac-Chr6:45131437 5.10E-09 transposed
Lac12g2279 Lac-Chr12:39919600 Lac6g2741 Lac-Chr6:45131437 1.20E-217 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86284 PF00069 Pkinase 4.50E-47 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2741 K08867 - csv:101219552 1268.45