Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac6g2759 | ATGGCATTGAGGTATCGAAAAAGTGATGAGATAGTTGAAGTTGATCGTGAAGAATGCTCGGTTACCATGAGAACTCACAAACGACGATGGAGGAGGCTCTTCGCCGCCATTTATTTCACCAGAGTTCTTATTTCTATGTCGAGGAAAGTCACCGGGCGTAAGTCCAGTGCACTTTTGCGCTCGCTTTCATACGTCGTTGTTGATGTGCAGTCGAATGACGACGAGCGGCGGCGGTGCATGGAAACTTTTTCGAACGTGGATCGAAAAGTTCTAAGTCAGATGACGAGAGAGAAGAATTATGAGTGTTTGGACCAATTTGGACGCATTGATGGATTGACAAATAGTCTCAAGACTAATTCTCGTAGCGGAATTAGTGCAACTGAGGATGATTTAATTCTTAGAAAGAACGCTTTTGGAACGAATACGTATTCGAAACTCCATGGTAGAAGCTTCATGAGTTTTGTGATCGAAGCGTTTGAAGATACAACGATTATCATTCTTTTGATCTGTGCAGCGCTTTCTTTGGGATTTGGTATCAAACAACACGGCTGGGACGACGGATGGTACGACGGCGGCAGCATTGTCGTCGCCATATTTCTGGTGGTCGTCGTCTCCGCCGCGAGCAACTTCAAGCAATCGAGACAGTTCGAGAAGCTTTCAAACGAGAGAGACGACATCAAAATCGATGTCACCAGAGCCGATCGACGCAAATCCGTATCGATATTCGAACTTCTGGTCGGAGACATTGTGCATTTGAAGATCGGAGATCAGATTCCGGCCGATGGATTGCTTCTCGATGGACATTCGCTGAAGATCGACGAATCTCACATGACTGGAGAGAGCGAATGCGTCGAAGTAAATCGTGAAATTAATCCGTTTTTGCTATCGGGAACGAAAGTGAGCGATGGATTTGGCGTGATGATGATCACTTCTGTTGGAATGAACACAGCCTGGGGAGAGATGATGAGCTCAATTCGACGGGAAATTAATGAGGAAACTCCACTGCAAGCTCGTCTGAACAAGATGACCGCCATTATCGGGAAGCTAGGGCTGACTGTGGCCGTGCTGGTGCTTCTTGTTCTTCTGATTCGCTATTTCACGGGCAGCACCGGCGAGTTCAATCGAAGCAAGACGAGGTTTAATGATGTAATGAACGCCGTTCTCGGCATGGTTGCGGCGGCTGTTACGATCGTCGTCGTGGCGATTCCGGAAGGTTTGCCTCTGGCTGTTACTTTAACTTTAGCTTACTCCATGAAGAAGATGATGGCGGATAATGCAATGGTTAGGAAACTCTCTGCTTGTGAAACCATGGGCTCTGCGACTACGATTTGTACGGATAAAACTGGTACTCTTACTTTGAATGAGATGAAAGTTACAGAGTTTTGGATTGGGGAAGATGAAATTATAGACACAGATTATTCCAATTCAGGGATTGGGAGCAAGGTTGTTGAATTACTCCACCAAGCAGTTGGATTGAATACTACTGGTAGTGTTCAAAAACTGCCTCTAGAAATATTCGGGAGTCCGACCGAGAAAGCGATACTTTCCTGGGCGGTATTCGACCTAGATTTGAACTTGGATGAACTGAAGAAACAACATGAGATAATCCAGGTAGAGACATTCAGTTCAGAGAAGAAGAGAAGCGGAGTTTCGATGAGACGACACGGCGAGAGGCTTATCCATACACATTGGAAAGGAGCAGCAGAGATGATCTTGGCTATGTGTTCATATTATTATGAGAAACAAGGAGCAGTTAGAGCCATTGATGGTGAAGCAAGAAGAAGATTGATTGGAATAATCACAACTATGGCAGAGAAGAGTCTCCGATGCATAGCCTTCGCCCACAAGTCGAGCGAAGACGAAGAACTCGATGAATCGACATTGACATTGCTCGGGATAGTCGGTTTGAAGGATCCTTGCAGGCCAGGAGTTAGAGCAGCTGTAGAATCATGTAAAGCTGCAGGAGTGAACATCAAAATGGTGACAGGTGATAATCTGCACACAGCAACAGCCATAGCAATTGAATGCGGAATACTAAACCTCGACGACGCTACGAACGACGAAGTTGTCGTCGAGGGCGTAAAGTTTAGAAGCTACACACCAGAGGAGAGGCTGGAAAAGATTGGGAACATCCGAGTGATGGGTAGATCTTCCCCATTTGACAAGCTTCTTATGGTACAATGCTTGAAGAATCAAGGCCATGTAGTGGCAGTGACAGGGGATGGAACAAATGATGCCCCTGCTCTTCATGAGGCAGACATTGGCCTTTCCATGGGGATTCAAGGAACTGAAGTGGCAAAGGAGAGCTCCGACATCGTCGTCTTAGACGACAACTTTACGTCGGTCGTCACCGTGCTGAAATGGGGAAGATGTGTTTACAACAACATTCAAAAGTTCATTCAGTTTCAGCTCACTGTGAATGTTGCAGCACTCGTCGTGAACTTCGTCGCGGCTGTCTCGTCCGGTAAAGTCCCCTAA | 2478 | 46.29 | MALRYRKSDEIVEVDREECSVTMRTHKRRWRRLFAAIYFTRVLISMSRKVTGRKSSALLRSLSYVVVDVQSNDDERRRCMETFSNVDRKVLSQMTREKNYECLDQFGRIDGLTNSLKTNSRSGISATEDDLILRKNAFGTNTYSKLHGRSFMSFVIEAFEDTTIIILLICAALSLGFGIKQHGWDDGWYDGGSIVVAIFLVVVVSAASNFKQSRQFEKLSNERDDIKIDVTRADRRKSVSIFELLVGDIVHLKIGDQIPADGLLLDGHSLKIDESHMTGESECVEVNREINPFLLSGTKVSDGFGVMMITSVGMNTAWGEMMSSIRREINEETPLQARLNKMTAIIGKLGLTVAVLVLLVLLIRYFTGSTGEFNRSKTRFNDVMNAVLGMVAAAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADNAMVRKLSACETMGSATTICTDKTGTLTLNEMKVTEFWIGEDEIIDTDYSNSGIGSKVVELLHQAVGLNTTGSVQKLPLEIFGSPTEKAILSWAVFDLDLNLDELKKQHEIIQVETFSSEKKRSGVSMRRHGERLIHTHWKGAAEMILAMCSYYYEKQGAVRAIDGEARRRLIGIITTMAEKSLRCIAFAHKSSEDEELDESTLTLLGIVGLKDPCRPGVRAAVESCKAAGVNIKMVTGDNLHTATAIAIECGILNLDDATNDEVVVEGVKFRSYTPEERLEKIGNIRVMGRSSPFDKLLMVQCLKNQGHVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIVVLDDNFTSVVTVLKWGRCVYNNIQKFIQFQLTVNVAALVVNFVAAVSSGKVP | 825 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 45313439 | 45315916 | - | Lag0006728.1 | Lac6g2759 | 612528 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac6g2759 | 825 | PRINTS | H+-transporting ATPase (proton pump) signature | 739 | 755 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac6g2759 | 825 | PRINTS | H+-transporting ATPase (proton pump) signature | 596 | 614 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac6g2759 | 825 | PRINTS | H+-transporting ATPase (proton pump) signature | 771 | 796 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac6g2759 | 825 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 107 | 822 | IPR023298 | - | |
| Lac6g2759 | 825 | SUPERFAMILY | Calcium ATPase, transduction domain A | 228 | 324 | IPR008250 | - | |
| Lac6g2759 | 825 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 446 | 452 | IPR018303 | - | |
| Lac6g2759 | 825 | SFLD | C1.7: P-type atpase like | 426 | 792 | - | - | |
| Lac6g2759 | 825 | FunFam | Calcium-transporting ATPase | 633 | 784 | - | - | |
| Lac6g2759 | 825 | Pfam | Cation transporter/ATPase, N-terminus | 109 | 174 | IPR004014 | - | |
| Lac6g2759 | 825 | NCBIfam | HAD-IC family P-type ATPase | 710 | 819 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac6g2759 | 825 | NCBIfam | HAD-IC family P-type ATPase | 388 | 468 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac6g2759 | 825 | SUPERFAMILY | HAD-like | 442 | 813 | IPR036412 | - | |
| Lac6g2759 | 825 | Gene3D | - | 454 | 639 | IPR023299 | GO:0000166(InterPro) | |
| Lac6g2759 | 825 | Gene3D | - | 157 | 820 | - | - | |
| Lac6g2759 | 825 | Pfam | haloacid dehalogenase-like hydrolase | 442 | 753 | - | - | |
| Lac6g2759 | 825 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 83 | 823 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| Lac6g2759 | 825 | SFLD | p-type atpase | 426 | 792 | IPR044492 | - | |
| Lac6g2759 | 825 | Gene3D | - | 134 | 326 | - | - | |
| Lac6g2759 | 825 | Gene3D | - | 441 | 784 | IPR023214 | - | |
| Lac6g2759 | 825 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 450 | 644 | IPR023299 | GO:0000166(InterPro) | |
| Lac6g2759 | 825 | PANTHER | CATION TRANSPORTING ATPASE | 81 | 825 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| Lac6g2759 | 825 | Pfam | E1-E2 ATPase | 227 | 422 | - | - | |
| Lac6g2759 | 825 | PRINTS | P-type cation-transporting ATPase superfamily signature | 273 | 287 | - | - | |
| Lac6g2759 | 825 | PRINTS | P-type cation-transporting ATPase superfamily signature | 632 | 643 | - | - | |
| Lac6g2759 | 825 | PRINTS | P-type cation-transporting ATPase superfamily signature | 739 | 758 | - | - | |
| Lac6g2759 | 825 | PRINTS | P-type cation-transporting ATPase superfamily signature | 763 | 775 | - | - | |
| Lac6g2759 | 825 | PRINTS | P-type cation-transporting ATPase superfamily signature | 654 | 664 | - | - | |
| Lac6g2759 | 825 | PRINTS | P-type cation-transporting ATPase superfamily signature | 444 | 458 | - | - | |
| Lac6g2759 | 825 | FunFam | Calcium-transporting ATPase | 204 | 326 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac12g0380 | Lac-Chr12:4377347 | Lac6g2759 | Lac-Chr6:45313439 | 8.40E-92 | dispersed | |
| Lac2g0955 | Lac-Chr2:7534550 | Lac6g2759 | Lac-Chr6:45313439 | 1.60E-65 | dispersed | |
| Lac6g2759 | Lac-Chr6:45313439 | Lac8g2014 | Lac-Chr8:38602625 | 4.60E-176 | dispersed | |
| Lac6g2759 | Lac-Chr6:45313439 | Lac2g0394 | Lac-Chr2:2889004 | 1.50E-171 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac6g2759 | K01537 | - | csv:101218531 | 1264.21 |