Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2759 ATGGCATTGAGGTATCGAAAAAGTGATGAGATAGTTGAAGTTGATCGTGAAGAATGCTCGGTTACCATGAGAACTCACAAACGACGATGGAGGAGGCTCTTCGCCGCCATTTATTTCACCAGAGTTCTTATTTCTATGTCGAGGAAAGTCACCGGGCGTAAGTCCAGTGCACTTTTGCGCTCGCTTTCATACGTCGTTGTTGATGTGCAGTCGAATGACGACGAGCGGCGGCGGTGCATGGAAACTTTTTCGAACGTGGATCGAAAAGTTCTAAGTCAGATGACGAGAGAGAAGAATTATGAGTGTTTGGACCAATTTGGACGCATTGATGGATTGACAAATAGTCTCAAGACTAATTCTCGTAGCGGAATTAGTGCAACTGAGGATGATTTAATTCTTAGAAAGAACGCTTTTGGAACGAATACGTATTCGAAACTCCATGGTAGAAGCTTCATGAGTTTTGTGATCGAAGCGTTTGAAGATACAACGATTATCATTCTTTTGATCTGTGCAGCGCTTTCTTTGGGATTTGGTATCAAACAACACGGCTGGGACGACGGATGGTACGACGGCGGCAGCATTGTCGTCGCCATATTTCTGGTGGTCGTCGTCTCCGCCGCGAGCAACTTCAAGCAATCGAGACAGTTCGAGAAGCTTTCAAACGAGAGAGACGACATCAAAATCGATGTCACCAGAGCCGATCGACGCAAATCCGTATCGATATTCGAACTTCTGGTCGGAGACATTGTGCATTTGAAGATCGGAGATCAGATTCCGGCCGATGGATTGCTTCTCGATGGACATTCGCTGAAGATCGACGAATCTCACATGACTGGAGAGAGCGAATGCGTCGAAGTAAATCGTGAAATTAATCCGTTTTTGCTATCGGGAACGAAAGTGAGCGATGGATTTGGCGTGATGATGATCACTTCTGTTGGAATGAACACAGCCTGGGGAGAGATGATGAGCTCAATTCGACGGGAAATTAATGAGGAAACTCCACTGCAAGCTCGTCTGAACAAGATGACCGCCATTATCGGGAAGCTAGGGCTGACTGTGGCCGTGCTGGTGCTTCTTGTTCTTCTGATTCGCTATTTCACGGGCAGCACCGGCGAGTTCAATCGAAGCAAGACGAGGTTTAATGATGTAATGAACGCCGTTCTCGGCATGGTTGCGGCGGCTGTTACGATCGTCGTCGTGGCGATTCCGGAAGGTTTGCCTCTGGCTGTTACTTTAACTTTAGCTTACTCCATGAAGAAGATGATGGCGGATAATGCAATGGTTAGGAAACTCTCTGCTTGTGAAACCATGGGCTCTGCGACTACGATTTGTACGGATAAAACTGGTACTCTTACTTTGAATGAGATGAAAGTTACAGAGTTTTGGATTGGGGAAGATGAAATTATAGACACAGATTATTCCAATTCAGGGATTGGGAGCAAGGTTGTTGAATTACTCCACCAAGCAGTTGGATTGAATACTACTGGTAGTGTTCAAAAACTGCCTCTAGAAATATTCGGGAGTCCGACCGAGAAAGCGATACTTTCCTGGGCGGTATTCGACCTAGATTTGAACTTGGATGAACTGAAGAAACAACATGAGATAATCCAGGTAGAGACATTCAGTTCAGAGAAGAAGAGAAGCGGAGTTTCGATGAGACGACACGGCGAGAGGCTTATCCATACACATTGGAAAGGAGCAGCAGAGATGATCTTGGCTATGTGTTCATATTATTATGAGAAACAAGGAGCAGTTAGAGCCATTGATGGTGAAGCAAGAAGAAGATTGATTGGAATAATCACAACTATGGCAGAGAAGAGTCTCCGATGCATAGCCTTCGCCCACAAGTCGAGCGAAGACGAAGAACTCGATGAATCGACATTGACATTGCTCGGGATAGTCGGTTTGAAGGATCCTTGCAGGCCAGGAGTTAGAGCAGCTGTAGAATCATGTAAAGCTGCAGGAGTGAACATCAAAATGGTGACAGGTGATAATCTGCACACAGCAACAGCCATAGCAATTGAATGCGGAATACTAAACCTCGACGACGCTACGAACGACGAAGTTGTCGTCGAGGGCGTAAAGTTTAGAAGCTACACACCAGAGGAGAGGCTGGAAAAGATTGGGAACATCCGAGTGATGGGTAGATCTTCCCCATTTGACAAGCTTCTTATGGTACAATGCTTGAAGAATCAAGGCCATGTAGTGGCAGTGACAGGGGATGGAACAAATGATGCCCCTGCTCTTCATGAGGCAGACATTGGCCTTTCCATGGGGATTCAAGGAACTGAAGTGGCAAAGGAGAGCTCCGACATCGTCGTCTTAGACGACAACTTTACGTCGGTCGTCACCGTGCTGAAATGGGGAAGATGTGTTTACAACAACATTCAAAAGTTCATTCAGTTTCAGCTCACTGTGAATGTTGCAGCACTCGTCGTGAACTTCGTCGCGGCTGTCTCGTCCGGTAAAGTCCCCTAA 2478 46.29 MALRYRKSDEIVEVDREECSVTMRTHKRRWRRLFAAIYFTRVLISMSRKVTGRKSSALLRSLSYVVVDVQSNDDERRRCMETFSNVDRKVLSQMTREKNYECLDQFGRIDGLTNSLKTNSRSGISATEDDLILRKNAFGTNTYSKLHGRSFMSFVIEAFEDTTIIILLICAALSLGFGIKQHGWDDGWYDGGSIVVAIFLVVVVSAASNFKQSRQFEKLSNERDDIKIDVTRADRRKSVSIFELLVGDIVHLKIGDQIPADGLLLDGHSLKIDESHMTGESECVEVNREINPFLLSGTKVSDGFGVMMITSVGMNTAWGEMMSSIRREINEETPLQARLNKMTAIIGKLGLTVAVLVLLVLLIRYFTGSTGEFNRSKTRFNDVMNAVLGMVAAAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADNAMVRKLSACETMGSATTICTDKTGTLTLNEMKVTEFWIGEDEIIDTDYSNSGIGSKVVELLHQAVGLNTTGSVQKLPLEIFGSPTEKAILSWAVFDLDLNLDELKKQHEIIQVETFSSEKKRSGVSMRRHGERLIHTHWKGAAEMILAMCSYYYEKQGAVRAIDGEARRRLIGIITTMAEKSLRCIAFAHKSSEDEELDESTLTLLGIVGLKDPCRPGVRAAVESCKAAGVNIKMVTGDNLHTATAIAIECGILNLDDATNDEVVVEGVKFRSYTPEERLEKIGNIRVMGRSSPFDKLLMVQCLKNQGHVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIVVLDDNFTSVVTVLKWGRCVYNNIQKFIQFQLTVNVAALVVNFVAAVSSGKVP 825
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 45313439 45315916 - Lag0006728.1 Lac6g2759 612528
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2759 825 PRINTS H+-transporting ATPase (proton pump) signature 739 755 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac6g2759 825 PRINTS H+-transporting ATPase (proton pump) signature 596 614 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac6g2759 825 PRINTS H+-transporting ATPase (proton pump) signature 771 796 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac6g2759 825 SUPERFAMILY Calcium ATPase, transmembrane domain M 107 822 IPR023298 -
Lac6g2759 825 SUPERFAMILY Calcium ATPase, transduction domain A 228 324 IPR008250 -
Lac6g2759 825 ProSitePatterns E1-E2 ATPases phosphorylation site. 446 452 IPR018303 -
Lac6g2759 825 SFLD C1.7: P-type atpase like 426 792 - -
Lac6g2759 825 FunFam Calcium-transporting ATPase 633 784 - -
Lac6g2759 825 Pfam Cation transporter/ATPase, N-terminus 109 174 IPR004014 -
Lac6g2759 825 NCBIfam HAD-IC family P-type ATPase 710 819 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac6g2759 825 NCBIfam HAD-IC family P-type ATPase 388 468 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac6g2759 825 SUPERFAMILY HAD-like 442 813 IPR036412 -
Lac6g2759 825 Gene3D - 454 639 IPR023299 GO:0000166(InterPro)
Lac6g2759 825 Gene3D - 157 820 - -
Lac6g2759 825 Pfam haloacid dehalogenase-like hydrolase 442 753 - -
Lac6g2759 825 NCBIfam calcium-translocating P-type ATPase, PMCA-type 83 823 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
Lac6g2759 825 SFLD p-type atpase 426 792 IPR044492 -
Lac6g2759 825 Gene3D - 134 326 - -
Lac6g2759 825 Gene3D - 441 784 IPR023214 -
Lac6g2759 825 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 450 644 IPR023299 GO:0000166(InterPro)
Lac6g2759 825 PANTHER CATION TRANSPORTING ATPASE 81 825 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Lac6g2759 825 Pfam E1-E2 ATPase 227 422 - -
Lac6g2759 825 PRINTS P-type cation-transporting ATPase superfamily signature 273 287 - -
Lac6g2759 825 PRINTS P-type cation-transporting ATPase superfamily signature 632 643 - -
Lac6g2759 825 PRINTS P-type cation-transporting ATPase superfamily signature 739 758 - -
Lac6g2759 825 PRINTS P-type cation-transporting ATPase superfamily signature 763 775 - -
Lac6g2759 825 PRINTS P-type cation-transporting ATPase superfamily signature 654 664 - -
Lac6g2759 825 PRINTS P-type cation-transporting ATPase superfamily signature 444 458 - -
Lac6g2759 825 FunFam Calcium-transporting ATPase 204 326 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0380 Lac-Chr12:4377347 Lac6g2759 Lac-Chr6:45313439 8.40E-92 dispersed
Lac2g0955 Lac-Chr2:7534550 Lac6g2759 Lac-Chr6:45313439 1.60E-65 dispersed
Lac6g2759 Lac-Chr6:45313439 Lac8g2014 Lac-Chr8:38602625 4.60E-176 dispersed
Lac6g2759 Lac-Chr6:45313439 Lac2g0394 Lac-Chr2:2889004 1.50E-171 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2759 K01537 - csv:101218531 1264.21