Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2785 ATGAATGCCAATACCCATGTGATGTTATCTCTTTTCCTCGTCTTGTTCGGGCTCTTCAATGGCGTTTTTTCTGCTGATGTTGTTGCTTCAGACCCGCCATTGTTGTTGCGTTGTGGTTCGAATGAGGAGGCCACCGATGACAATGGCCGGAAATGGACCTCCGATTCGAAATTCCTCGACCCCAAAAATACCATAGCTGCACCGGTGGGATTTCAAGATCCGTCGATGACATCGCAGGTTCCGTACATGGAGGCTAGGGTTTTCACTGCCGCGACGACGTATAAATTTCCTATCAAACCTGGTAGTCGCTATTGGCTTCGACTCCATTTTTACCCTTCCACTTACGGCGCTCATGATTCTACTAATTCCTTTTCCACCGTCGCGGCGAATGATTTGATCCTTGCGAAGAATTTTAGCGCTTATCTCACATGTCAGGCTTTCACTCAGGCTTACATTGTGCGCGAATTTTCTCTCGCGGCATCGGAATCTGACACGCTAAATTTGATCTTCACCCCTGTTTCAGGATTTGCTTTTGTTAATGGGATTGAATTGATTCAAATGCCGGAGATCTTTGGGCAGGCTGTAATGGTTGGTCCAGGCCAGCAATCTATGGATGTATCAAACTCGAATATGCAGACGATGGTGAGATTGAACGTCGGCGGGAGCTACATTTCTCCAGCAAACGATTCCGGTCTGAGTAGGGCATGGTATGATGATTATCCTTATCTTTTTGGTGCTGCTGCGGGTATTGTGATGGAAGCTTCTGCGAAGTTGGCGATTGATTATAAGGATATGCCGAAATATATTGCGCCTGTGGAACTTTACAGGTCATTGAGATCAATGGGGCCAGATAAGAACGTGAATATGAATTACAATTTGACATGGTTGTTTCCTAATATTGATCCAGGGTTCTTGTATCTTATGAGGTTGCATTTCTGTGATCTGACTCTGAGTAGGCCAAATCAGGTGGTGTTTGATGTGTTCATCAACAATCAAACAGCGGACGTGACTGGGATTGATGTGATTGCTTGGGCGGGCGCTCGGGGGATTCCGGTATTCGTGGATTATGTTGTGTTTGCACCAGAAGCACCTACAATGCAGCAGCTTTGGCTGGCATTGCATCCTAAGATGACGGATAAACCCGAGTTTGCGGATTCTATGTTGAATGGTGTTGAGATATTCAAGCTCGAATCGGGGAAGAACTTGGCAGGGAAGAATCCTCAGCCCTCGGCATTTAGGATGAAGGTTGAGGCAGAAACAGAGAGAAATTTTGAAACAAAGGGCAGAAATGCTGAAGTGATTGGAGGGGCTGCAGGGGGGGCTGCAGCTTTTGTTGTGGTGGCACTTTGCTTTGCTGTGTACCAAAGGAAGAACAGAATGCCAGGGGCTGATTCACACACAACTAGCTGGTTGCCGATCTATGGGAATTCGCATTCAAGTGGGAGCAAATCGACGACGTCTGGGAAAAGTATGGCGAGTAATTTGGCGCAAGGTTTGGCCCGGCATTTTTCACTTTCGGAGATTTTACATGCTACCAAGAGCTTTAGTGAGTCTAATGTGATTGGGGTTGGAGGATTTGGGAAGGTGTACAAGGGAGTGGTTGATGGAGGAACGAAAGTTGCTATTAAAAGGTCTAATCCGTCATCGGAACAAGGAGTTCATGAGTTCCTTACGGAAATCGATTTGCTTTCGAAGCTGAGGCACAAACATTTGGTGTCCTTGATTGGTTTTTGTGATGAAGAGAATGAAATGTGTTTGGTTTATGATTATATGGGTTTGGGAACTCTGAGGGAACATCTGTATAAGACCAATAATAAAGCTCGTCTCTCATGGAAGCAAAGGCTGGAGATTTGTATTGGAGCAGCTAGAGGACTTCACTACCTTCACACAGGAGCACAGTACACCATCATTCATAGAGATGTTAAAACTACCAACATTCTCTTGGATGAAAACTGGGTTGCAAAGGTTTCCGATTTTGGGCTCTCAAAAACTGGTCCGAACATGTCTACTGGTCATGTTAGCACAGTAGTTAAGGGTAGTTTTGGCTACTTAGATCCAGAGTACTTCCGAAGGCAACAATTGACTGAAAAATCTGATGTCTATTCTTTTGGGGTTGTCCTGTTCGAAGTGTTGTGTGCAAGGCCTGCTCTAAATCCAAGCCTGCCGAAGGAACAGGTTAGTCTTGCCGATTGGGCGTTGCACTGCAAACGGAAAGGAGTCCTTGACGATCTTGTCGACCCCTACCTCAAAGGGAAAATCACCCCTGAAAGCTTGAAGAAGTTTGCTGATGCAGCTGAGAAATGCCTGGATGACCATGGAGCCGAGCGACCATCTATGGGTGATGTGTTGTGGAACCTTGAATTTGCTCTTCAACTTCAAGAAAGTGCCGATGGTGGTGGTTCAAGTCGCAGCTCGAGGATAGACGATGAAGACAGCCAGAGAAGGCGAGACATGTCTGCACATTACAATAACCTTAGCCTTGGAAGTGAGGAAGAGTTACTTCAATCTAATGAGCAAAACAGTACTGCAATCTTCTCTCAACTTGTCCATCCGACAGGCCGATGA 2565 45.96 MNANTHVMLSLFLVLFGLFNGVFSADVVASDPPLLLRCGSNEEATDDNGRKWTSDSKFLDPKNTIAAPVGFQDPSMTSQVPYMEARVFTAATTYKFPIKPGSRYWLRLHFYPSTYGAHDSTNSFSTVAANDLILAKNFSAYLTCQAFTQAYIVREFSLAASESDTLNLIFTPVSGFAFVNGIELIQMPEIFGQAVMVGPGQQSMDVSNSNMQTMVRLNVGGSYISPANDSGLSRAWYDDYPYLFGAAAGIVMEASAKLAIDYKDMPKYIAPVELYRSLRSMGPDKNVNMNYNLTWLFPNIDPGFLYLMRLHFCDLTLSRPNQVVFDVFINNQTADVTGIDVIAWAGARGIPVFVDYVVFAPEAPTMQQLWLALHPKMTDKPEFADSMLNGVEIFKLESGKNLAGKNPQPSAFRMKVEAETERNFETKGRNAEVIGGAAGGAAAFVVVALCFAVYQRKNRMPGADSHTTSWLPIYGNSHSSGSKSTTSGKSMASNLAQGLARHFSLSEILHATKSFSESNVIGVGGFGKVYKGVVDGGTKVAIKRSNPSSEQGVHEFLTEIDLLSKLRHKHLVSLIGFCDEENEMCLVYDYMGLGTLREHLYKTNNKARLSWKQRLEICIGAARGLHYLHTGAQYTIIHRDVKTTNILLDENWVAKVSDFGLSKTGPNMSTGHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPALNPSLPKEQVSLADWALHCKRKGVLDDLVDPYLKGKITPESLKKFADAAEKCLDDHGAERPSMGDVLWNLEFALQLQESADGGGSSRSSRIDDEDSQRRRDMSAHYNNLSLGSEEELLQSNEQNSTAIFSQLVHPTGR 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45561095 45563659 + Lag0006754.1 Lac6g2785 612554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2785 854 MobiDBLite consensus disorder prediction 795 816 - -
Lac6g2785 854 ProSiteProfiles Protein kinase domain profile. 515 789 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g2785 854 CDD STKc_IRAK 521 787 - -
Lac6g2785 854 ProSitePatterns Serine/Threonine protein kinases active-site signature. 636 648 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g2785 854 FunFam FERONIA receptor-like kinase 209 397 - -
Lac6g2785 854 FunFam receptor-like protein kinase FERONIA 477 590 - -
Lac6g2785 854 FunFam Receptor-like protein kinase FERONIA 591 805 - -
Lac6g2785 854 SUPERFAMILY Protein kinase-like (PK-like) 500 784 IPR011009 -
Lac6g2785 854 Pfam Malectin-like domain 37 395 IPR024788 -
Lac6g2785 854 Gene3D Phosphorylase Kinase; domain 1 476 590 - -
Lac6g2785 854 ProSitePatterns Protein kinases ATP-binding region signature. 521 543 IPR017441 GO:0005524(InterPro)
Lac6g2785 854 SMART serkin_6 515 789 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g2785 854 PANTHER OS07G0166700 PROTEIN 503 794 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Lac6g2785 854 FunFam FERONIA receptor-like kinase 33 188 - -
Lac6g2785 854 Pfam Protein tyrosine and serine/threonine kinase 518 732 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g2785 854 Gene3D - 34 188 - -
Lac6g2785 854 Gene3D - 209 396 - -
Lac6g2785 854 Gene3D Transferase(Phosphotransferase) domain 1 591 806 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1768 Lac-Chr1:39199954 Lac6g2785 Lac-Chr6:45561095 1.70E-237 dispersed
Lac4g2841 Lac-Chr4:47036274 Lac6g2785 Lac-Chr6:45561095 3.70E-160 dispersed
Lac6g2785 Lac-Chr6:45561095 Lac9g2521 Lac-Chr9:43902846 2.30E-159 dispersed
Lac10g0572 Lac-Chr10:4387639 Lac6g2785 Lac-Chr6:45561095 2.80E-42 transposed
Lac8g2052 Lac-Chr8:39018970 Lac6g2785 Lac-Chr6:45561095 5.30E-51 transposed
Lac2g2460 Lac-Chr2:35879281 Lac6g2785 Lac-Chr6:45561095 3.40E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86286 PF12819 Malectin_like 2.70E-34 CL0202 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2785 - - - 0.0