Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac6g2827 | ATGGGGTGGGGGGATGGGCACCAACAGGGTACTCCAGTTAACATTATTGTAGGTTCTCAAGTCTGGATTGAGGATCCAGAAGTTGCTTGGCTTGATGGACAGGTCAACAAGATTACAGGGCAGGAAGCTGAGATCGAAGCCAGCAATGGAAAAAAGGTTACTGCAAAACTGGCCAAAATATACCCAAAAGATATGGAGGCTCCAGCTGGTGGCGTTGATGACATGACAAAGCTATCTTACTTGCATGAGCCTGGAGTTCTACAAAATTTAAAAACTCGATATGAACTCAATGAGATCTATACTTACACTGGCAATATTCTTATTGCAATTAATCCATTCCAAAGATTGCCTCATCTTTATGATGGTCACATGATGCAACAATACAAAGGAGCACCGTTTGGAGAATTGAGTCCTCATGTTTTTGCTGTTGCTGATGTTGCATACAGGGCAATGATTAATGAGGGTAAAAGCAATTCAATTCTGGTCAGTGGTGAAAGTGGAGCAGGGAAAACTGAAACCACAAAAATGCTCATGCGATACCTTGCATTTTTAGGGGGTCGAGCAGCCACTGAAGGACGAACAGTTGAGCAACAAGTTCTTGAGTCAAATCCAGTGCTTGAAGCTTTTGGAAATGCTAAAACTGTCAGAAATAACAATTCCAGTCGCTTTGGTAAATTTGTTGAAATCCAGTTTGACAAGCATGGAAGAATCTCAGGAGCAGCTATCCGAACTTACCTTCTTGAGAGGTCTCGTGTTTGCCAAGTTTCTGATCCTGAGCGCAATTATCATTGCTTTTACCTCCTTTGTGCTGCACCTCAGGAGCTAGGAAATCCCAGGTCATTTCATTATCTTAATCAATCAAATTGCTACGAACTGGTTGATGTAAGTGATGCTCATGACTATCTAGCCACTAGAAGAGCTATGGATGTTGTTGGAATAAGTGCTAAGGAGCAGGAAGCAATCTTTAGGGTTGTTGCTGCAATTCTTCATCTTGGAAACATTGAATTCACCAAGGGCAAAGATGTTGATTCATCAGTTCCAAAAGATGACAAGGCCAAATTTCATCTTAAAATGACTTCAGAGCTCCTCATGTGTGATAATGCTGGTCTTGAAGATGCATTATGTAAGCGTGTCATGATCACCCCTGAAGAAGTGATAAAACGTAGCTTGGATCCTCAAAGTGCGGCTGTTAGCCGTGACGGTTTGGCCAAAACCATATATTCTCGACTATTTGACTGGCTGGTTGATAAAATTAATGTCTCCATTGGACAAGATCCTAATTCCAAGTCCCTGATTGGGGTCCTTGATATCTACGGTTTTGAAAGCTTCAAAGCTAACAGTTTTGAGCAGTTCTGTATTAATTTCACAAATGAGAAGTTACAGCAACATTTCAATCAGCACGTTTTCAAAATGGAACAAGAAGAATACACTAAAGAAGAGATTGATTGGAGTTACATTGAGTTTGTCGACAACCAAGATGTGTTGGATCTCATTGAAAAGAAACCTGGTGGAATTGTGGCTCTCCTTGACGAAGCTTGCATGTTTCCAAAGTCAACACATGAAACATTTGCTAACAAGCTCTATCAGACTTTCAAAACACATAAGCGGTTTATAAAGCCAAAACTTTCTCGAACAGATTTTACCATCGCTCATTATGCTGGAGAGGTTTTATATCAATCTGATCAGTTTTTGGACAAAAACAAGGATTATGTTGTTCCTGAACATCAGGATTTGTTGGGTGCCTCCAAATGTTCATTTGTGGCTGGCCTTTTCCCACCACTAAAAGAAGAATCTGCAAAATCTTCCAAATTTTCTTCAATTGGGTCTCGCTTTAAGCTACAACTACAATCTTTAATGGAGACATTAAATTCCACAGAACCTCACTACATCAGATGTGTGAAGCCAAACAACCTCTTAAAACCTGCCATCTTTGAGAATGTCAACATAATGCAACAACTACGTTGTGGTGGTGTTTTAGAGGCAATCAGAATCAGTTGTGCAGGGTACCCTACTCGCCGTGCGTTCTTTGAATTCATCAACCGATTTGGAATTTTAGCTCAAGAATCTTTGGAAGTAAACTATGATGAGAAAACTGTGTGCAAAAAGATATTAGAAAAGCAGGGACTTAAAGGGTTTCAGATAGGTAAGACAAAAGTATTCCTGAGGGCTGGCCAGATGGCTGAATTAGATGCTCGGAGAGCAGAGGTGCTGAGTAATGCAGCAAAGACTATTCAGCGGCGCACACGAACCCATATTGCTCGCAAACAGTTCATTGCATTACGAAAGGCAACCATACATGTGCAATCTAGGTGGAGAGGAAAACTGGCTTGCAAACTCTACAAGAATTTGAAGAGGGAGGCAGCTGCTGTGAAAATTCAGAAAAATGCTCGGAGATTTCATGCGAGAAAATCCTATAAAAGACTACAAAGTTCAGTGCTTATTGTGCAAACTGGTTTAAGGGCGATGGCAGCTAGGAATGAATTCAGATTTAGGAAGCAGACAAAGGCAGCAATTATCATTCAGGCTCGATGGCGTTGCCATAAAGCTGCCTCATACTATAAGAGACTTCAGAGAGGCTCAATAATCGCACAATGCAGATGGAGGGGAAAAGTTGCAAGAAAAGAACTTAGAAAACTCAAATTGGCTGCAAGGGAGACAGGTGCACTTAAAGAAGCAAAGGATAAGTTGGAAAAGAAAGTGGAGGAACTTACTTGGCGCATACAATTAGAAAAACGTCTAAGGACGGACCTGGAAGAGGCAAAAGCACAGGAGATAGCGAAATTCCAAAATATTGTGCAAGAACTTCAGGCAAAAGTTGATGAAACAAACTCGGTGCTTGCAAAGGAGCGAGAAGCTGTGAAGAAGGCTATTGAAGAAGCACCTCCTGTTATACAAGAAACCCAAGTTCTAGTGGAAGATACTAAGAAAATTGATGATTTGACAGCAGAAGTAGAAAGCTTAAAGACCTCACTGGAGACAGAGAAAAACAGAGCTGATGAATATGAGAAAAAATGTGGTGAAGTAGAACAGTCTAGAGAAGAACAACGTAAAAAGTTAGAAGACACTGAGAAAAAAGCTCATCAGCTCCAGGAATCATTGACCAGGCTAGAAGAGAAGCTTTCCAATTTGGAATCAGAGAATCAAGTTTTACGCCAACAAGCTGTGTCTATGGCACCTAATAAACTTCTCTCAGGACGGTCTAGATCAATTCTTCAGAGAGGTGCTGAAAGTGGTCATTATGGAGGGGAAGGGAGGACGCCTTTGGATCTACACAGTCCTTCTATTAACCAGAGGGATTCAGAAGTAGAGGATAAACCTCAAAAATCACTAAATGAGAAACAGCAAGAGAATCAAGAATTGCTCATTAGATGTATTGCACAGCACCTTGGCTTTGCATCAAACAGGCCAATTGCTGCTTGTATCATCTACAAGTGCCTGCTTCAGTGGAGGTCATTTGAAGTTGAACGCACCAGTGTATTCGATAGGATAATTCAAACTATAGGCCATGCAATTGAGACCCAGGATAACAATGACGTCTTGGCCTATTGGTTATCCAACGCTTCAACGCTTCTCTTACTGCTTCAGCGCACTTTGAAAGCAAGTGGTGCTGCTGGAATGGCTCCACAGCGTCGGCGATCATCATCAGCTACCCTATTTGGGAGGATGACTCAAAGTTTCCGAGGAGCTCCACAAGGTGTCAATCTATCCTTAATCAATGGTGGAACTAGTGGCGGAGTGGACACTTTAAGGCAAGTTGAAGCGAAGTACCCTGCTTTGCTTTTCAAGCAGCAGCTGACAGCCTATGTAGAGAAAATTTATGGAATGATAAGAGACAATTTGAAGAAAGAAATTTCTCCATTGCTAGGATTGTGCATCCAGGCACCAAGAACATCAAGAGCAAGTTTGGTGAAGGGTTCTTCTCGTTCTGTTGCCACCACAGAGGCCCAGCGTGCCTTAATTGCTCACTGGCAAGGAATCGTGAAGAGCCTCGGAAACTTCTTAAACACCTTAAAAGCAAATCATGTACCTCCATTTTTGGTTCGTAAAGTCTTCATACAAATATTTTCTTTCATCAACGTTCAACTATTTAACAGTCTTCTATTACGAAGAGAGTGTTGTTCATTTAGCAATGGTGAATATGTGAAAGCTGGGCTGTCTGAATTAGAGCATTGGTGTTATAAAGCTACTGATGAGTATGCAGGTTCTGCTTGGGACGAGCTAAAGCATATAAGACAAGCGATCGGGTTTCTGGTCATACATCAGAAACCAAAGAAAACGCTAGACGAAATAAGTCACGATCTATGCCCTGTACTAAGCATACAGCAGCTGTATCGTATCAGTACGATGTACTGGGACGACAAGTATGGCACGCATAGTGTTTCTCCTGATGTTATATCCAATATGAGGGTGTTAATGACCGAAGATTCGAATCATGCAATTAGCAATTCATTTCTATTGGACGACGATTCAAGCATTCCATTCTCAGTTGATGATTTATCAAAGTCTATGGAACAAATAGACATCGGAGACATCGAACCGCCACCACTGATTCGGGAGAACTCAGGCTTTAGTTTCTTGTTACCACGAACAGACTAA | 4596 | 41.49 | MGWGDGHQQGTPVNIIVGSQVWIEDPEVAWLDGQVNKITGQEAEIEASNGKKVTAKLAKIYPKDMEAPAGGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAINPFQRLPHLYDGHMMQQYKGAPFGELSPHVFAVADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRAATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKHGRISGAAIRTYLLERSRVCQVSDPERNYHCFYLLCAAPQELGNPRSFHYLNQSNCYELVDVSDAHDYLATRRAMDVVGISAKEQEAIFRVVAAILHLGNIEFTKGKDVDSSVPKDDKAKFHLKMTSELLMCDNAGLEDALCKRVMITPEEVIKRSLDPQSAAVSRDGLAKTIYSRLFDWLVDKINVSIGQDPNSKSLIGVLDIYGFESFKANSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIVALLDEACMFPKSTHETFANKLYQTFKTHKRFIKPKLSRTDFTIAHYAGEVLYQSDQFLDKNKDYVVPEHQDLLGASKCSFVAGLFPPLKEESAKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNLLKPAIFENVNIMQQLRCGGVLEAIRISCAGYPTRRAFFEFINRFGILAQESLEVNYDEKTVCKKILEKQGLKGFQIGKTKVFLRAGQMAELDARRAEVLSNAAKTIQRRTRTHIARKQFIALRKATIHVQSRWRGKLACKLYKNLKREAAAVKIQKNARRFHARKSYKRLQSSVLIVQTGLRAMAARNEFRFRKQTKAAIIIQARWRCHKAASYYKRLQRGSIIAQCRWRGKVARKELRKLKLAARETGALKEAKDKLEKKVEELTWRIQLEKRLRTDLEEAKAQEIAKFQNIVQELQAKVDETNSVLAKEREAVKKAIEEAPPVIQETQVLVEDTKKIDDLTAEVESLKTSLETEKNRADEYEKKCGEVEQSREEQRKKLEDTEKKAHQLQESLTRLEEKLSNLESENQVLRQQAVSMAPNKLLSGRSRSILQRGAESGHYGGEGRTPLDLHSPSINQRDSEVEDKPQKSLNEKQQENQELLIRCIAQHLGFASNRPIAACIIYKCLLQWRSFEVERTSVFDRIIQTIGHAIETQDNNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGAPQGVNLSLINGGTSGGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSVATTEAQRALIAHWQGIVKSLGNFLNTLKANHVPPFLVRKVFIQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLSELEHWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDVISNMRVLMTEDSNHAISNSFLLDDDSSIPFSVDDLSKSMEQIDIGDIEPPPLIRENSGFSFLLPRTD | 1531 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 45895318 | 45908897 | - | Lag0006796.1 | Lac6g2827 | 612596 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac6g2827 | 1531 | FunFam | unconventional myosin-Va | 788 | 835 | - | - | |
| Lac6g2827 | 1531 | FunFam | unconventional myosin-Va | 739 | 787 | - | - | |
| Lac6g2827 | 1531 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 787 | 885 | IPR027417 | - | |
| Lac6g2827 | 1531 | ProSiteProfiles | IQ motif profile. | 833 | 860 | - | - | |
| Lac6g2827 | 1531 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 46 | 787 | IPR027417 | - | |
| Lac6g2827 | 1531 | PRINTS | Myosin heavy chain signature | 431 | 459 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac6g2827 | 1531 | PRINTS | Myosin heavy chain signature | 100 | 119 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac6g2827 | 1531 | PRINTS | Myosin heavy chain signature | 484 | 512 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac6g2827 | 1531 | PRINTS | Myosin heavy chain signature | 157 | 182 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac6g2827 | 1531 | PRINTS | Myosin heavy chain signature | 204 | 231 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac6g2827 | 1531 | MobiDBLite | consensus disorder prediction | 1096 | 1112 | - | - | |
| Lac6g2827 | 1531 | Gene3D | - | 441 | 625 | - | - | |
| Lac6g2827 | 1531 | CDD | MYSc_Myo11 | 84 | 722 | IPR036018 | - | |
| Lac6g2827 | 1531 | Gene3D | - | 669 | 732 | - | - | |
| Lac6g2827 | 1531 | FunFam | Class V myosin | 441 | 577 | - | - | |
| Lac6g2827 | 1531 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 314 | 603 | - | - | |
| Lac6g2827 | 1531 | ProSiteProfiles | IQ motif profile. | 856 | 885 | - | - | |
| Lac6g2827 | 1531 | FunFam | Myosin 2 | 314 | 429 | - | - | |
| Lac6g2827 | 1531 | FunFam | unconventional myosin-Va | 836 | 883 | - | - | |
| Lac6g2827 | 1531 | Pfam | DIL domain | 1350 | 1453 | IPR002710 | - | |
| Lac6g2827 | 1531 | SMART | iq_5 | 784 | 806 | IPR000048 | GO:0005515(InterPro) | |
| Lac6g2827 | 1531 | SMART | iq_5 | 855 | 877 | IPR000048 | GO:0005515(InterPro) | |
| Lac6g2827 | 1531 | SMART | iq_5 | 832 | 854 | IPR000048 | GO:0005515(InterPro) | |
| Lac6g2827 | 1531 | SMART | iq_5 | 759 | 781 | IPR000048 | GO:0005515(InterPro) | |
| Lac6g2827 | 1531 | SMART | iq_5 | 736 | 758 | IPR000048 | GO:0005515(InterPro) | |
| Lac6g2827 | 1531 | SMART | iq_5 | 807 | 829 | IPR000048 | GO:0005515(InterPro) | |
| Lac6g2827 | 1531 | MobiDBLite | consensus disorder prediction | 991 | 1031 | - | - | |
| Lac6g2827 | 1531 | FunFam | Myosin heavy chain | 260 | 309 | - | - | |
| Lac6g2827 | 1531 | ProSiteProfiles | IQ motif profile. | 737 | 764 | - | - | |
| Lac6g2827 | 1531 | ProSiteProfiles | IQ motif profile. | 760 | 789 | - | - | |
| Lac6g2827 | 1531 | Pfam | Myosin N-terminal SH3-like domain | 17 | 58 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac6g2827 | 1531 | MobiDBLite | consensus disorder prediction | 1075 | 1113 | - | - | |
| Lac6g2827 | 1531 | Gene3D | - | 260 | 312 | - | - | |
| Lac6g2827 | 1531 | SMART | MYSc_2a | 65 | 735 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac6g2827 | 1531 | CDD | MyosinXI_CBD | 1112 | 1497 | IPR037975 | GO:0007015(InterPro) | |
| Lac6g2827 | 1531 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 16 | 65 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac6g2827 | 1531 | ProSiteProfiles | IQ motif profile. | 785 | 812 | - | - | |
| Lac6g2827 | 1531 | Coils | Coil | 879 | 913 | - | - | |
| Lac6g2827 | 1531 | PANTHER | MYOSIN | 20 | 1473 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0009860(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Lac6g2827 | 1531 | Pfam | IQ calmodulin-binding motif | 834 | 854 | IPR000048 | GO:0005515(InterPro) | |
| Lac6g2827 | 1531 | Pfam | IQ calmodulin-binding motif | 761 | 781 | IPR000048 | GO:0005515(InterPro) | |
| Lac6g2827 | 1531 | Pfam | IQ calmodulin-binding motif | 860 | 877 | IPR000048 | GO:0005515(InterPro) | |
| Lac6g2827 | 1531 | Pfam | IQ calmodulin-binding motif | 739 | 757 | IPR000048 | GO:0005515(InterPro) | |
| Lac6g2827 | 1531 | Pfam | IQ calmodulin-binding motif | 787 | 806 | IPR000048 | GO:0005515(InterPro) | |
| Lac6g2827 | 1531 | ProSiteProfiles | IQ motif profile. | 808 | 837 | - | - | |
| Lac6g2827 | 1531 | Pfam | Myosin head (motor domain) | 72 | 722 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac6g2827 | 1531 | Gene3D | - | 787 | 834 | - | - | |
| Lac6g2827 | 1531 | Gene3D | - | 835 | 884 | - | - | |
| Lac6g2827 | 1531 | Gene3D | - | 735 | 786 | - | - | |
| Lac6g2827 | 1531 | ProSiteProfiles | Dilute domain profile. | 1161 | 1474 | IPR002710 | - | |
| Lac6g2827 | 1531 | ProSiteProfiles | Myosin motor domain profile. | 70 | 734 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac6g2827 | 1531 | SMART | DIL_2 | 1349 | 1456 | IPR002710 | - | |
| Lac6g2827 | 1531 | Gene3D | Kinesin motor domain | 73 | 664 | IPR036961 | - | |
| Lac6g2827 | 1531 | Coils | Coil | 970 | 1053 | - | - | |
| Lac6g2827 | 1531 | Coils | Coil | 918 | 959 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac3g1058 | Lac-Chr3:8663961 | Lac6g2827 | Lac-Chr6:45895318 | 0.00E+00 | dispersed | |
| Lac4g1881 | Lac-Chr4:38092603 | Lac6g2827 | Lac-Chr6:45895318 | 5.20E-260 | dispersed | |
| Lac4g2709 | Lac-Chr4:46031117 | Lac6g2827 | Lac-Chr6:45895318 | 0.00E+00 | dispersed | |
| Lac6g0141 | Lac-Chr6:1176788 | Lac6g2827 | Lac-Chr6:45895318 | 9.30E-126 | dispersed | |
| Lac6g0142 | Lac-Chr6:1187286 | Lac6g2827 | Lac-Chr6:45895318 | 7.30E-307 | dispersed | |
| Lac6g2827 | Lac-Chr6:45895318 | Lac7g0513 | Lac-Chr7:4083896 | 0.00E+00 | dispersed | |
| Lac6g2827 | Lac-Chr6:45895318 | Lac4g0495 | Lac-Chr4:11472923 | 7.50E-15 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac6g2827 | K10357 | - | csv:101206606 | 2873.57 |