Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2829 ATGGCGAACCGGTGGTGGACCTCCGGCCAGATGGGTCTTCCCGGAGTTGATCATACATCGACAAGCTCCTCTGCCATGAGAAAACCAGATCTGGGGATCTCCATGAACGACAACGGCGGACCGGTTAACAGCGGTGGCGACGACGATGATGATAGAGACAACGGCGGTGATGAGCCTAAAGAAGGAGCGGTTGAAGTTCCAACGCGCCGCCCTCGTGGCCGGCCGCCGGGCTCCAAGAACAAGCCCAAGCCACCTATCTTTGTTACTAGGGATAGCCCTAATGCCCTAAAAAGCCATGTCATGGAGATTTCTAATGGAGCTGATATTGCTGAGAGTGTTGCTCAATTCGCCCGACGACGACAGAGAGGTGTTTCTGTACTTAGTGGCAGCGGCACGGTAACAAATGTGACGCTCCGGCAACCGTCTGCGCCCGGTGCAGTCTTGACCCTCCACGGCCGATTCGAGATTCTTTCTTTGACTGGAACTTTCCTCCCTGGACCGGCCCCACCCGGCTCCACCGGACTAACGATCTACTTGGCTGGAGGTCAAGGGCAGGTGGTGGGTGGCAGCGTCGTCGGGCCACTCACCGCTGCCGGTCCGGTGATGGTGATTGCTGCGACGTTTTCCAACGCAACATACGAACGATTACCCTTAGAGGAGGAGGAAGACGGCGGTGGAGGAGCACAAGGGCACGCATCGGCAGGCGGTGGCGCAGGCGACGGTTCACCGCAAGGCATCGGTGGCGGAGTTGGAGATCCATCAGCTATGCCACCACTGTACAATTTACCTCCGAATTTGCTGCCGAACGGCGGCGGCGGGCAGATGAACCAGGAGGCTTATGGTTGGGCTCACGGCGGCCGGCCGTCGTTCTAA 873 58.65 MANRWWTSGQMGLPGVDHTSTSSSAMRKPDLGISMNDNGGPVNSGGDDDDDRDNGGDEPKEGAVEVPTRRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEISNGADIAESVAQFARRRQRGVSVLSGSGTVTNVTLRQPSAPGAVLTLHGRFEILSLTGTFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGPLTAAGPVMVIAATFSNATYERLPLEEEEDGGGGAQGHASAGGGAGDGSPQGIGGGVGDPSAMPPLYNLPPNLLPNGGGGQMNQEAYGWAHGGRPSF 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45927148 45928213 + Lag0006798.1 Lac6g2829 612598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2829 290 MobiDBLite consensus disorder prediction 219 290 - -
Lac6g2829 290 PIRSF ESCAROLA 11 290 IPR014476 GO:0003680(InterPro)
Lac6g2829 290 SUPERFAMILY AF0104/ALDC/Ptd012-like 94 221 - -
Lac6g2829 290 MobiDBLite consensus disorder prediction 13 29 - -
Lac6g2829 290 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 37 288 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac6g2829 290 FunFam AT-hook motif nuclear-localized protein 96 223 - -
Lac6g2829 290 MobiDBLite consensus disorder prediction 1 91 - -
Lac6g2829 290 Pfam Plants and Prokaryotes Conserved (PCC) domain 98 209 IPR005175 -
Lac6g2829 290 CDD DUF296 97 180 IPR005175 -
Lac6g2829 290 ProSiteProfiles PPC domain profile profile. 93 231 IPR005175 -
Lac6g2829 290 Gene3D - 97 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1008 Lac-Chr13:8513065 Lac6g2829 Lac-Chr6:45927148 1.30E-66 dispersed
Lac2g0047 Lac-Chr2:386167 Lac6g2829 Lac-Chr6:45927148 3.60E-64 dispersed
Lac2g0777 Lac-Chr2:6018791 Lac6g2829 Lac-Chr6:45927148 1.10E-39 dispersed
Lac3g1447 Lac-Chr3:13128487 Lac6g2829 Lac-Chr6:45927148 3.90E-36 dispersed
Lac6g2829 Lac-Chr6:45927148 Lac7g0635 Lac-Chr7:5083327 2.70E-83 dispersed
Lac6g2829 Lac-Chr6:45927148 Lac6g2832 Lac-Chr6:45956472 1.20E-17 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2829 - - - 0.0