Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2847 ATGGCGGATAAAGGCAGAGACGGCGGCCACGCCAGTTTACTCGACGGGAAGTACGAATTAGGCCGCCTTCTAGGGCATGGGACCTTCGCCAAGGTCTACCATGCGCGGAATCTGCGAACGGGGAAGAGCGTCGCGATGAAAGTGGTTGGGAAGGAGAAGATCATCAAAGTCGGTATGATGGAGCAGATCAAGAGAGAAATCTCTGTTATGAAAATGGTGAAGCATCCGAATATTGTGGAGCTTCACGAGGTGATGGCGAGTAAATCGAAGATCTATTTCGCGATGGAGCTTGTTAGAGGTGGTGAACTGTTCTCTAAAATCGCTAAAGGTCGATTGCGAGAGGATGTGGCTAGGGTTTACTTTCAGCAGTTGATATCTGCAATCGATTTCTGCCATAGCCGTGGAGTTTACCACCGCGATCTGAAACCGGAGAATCTCCTCCTCGACGAAGACGGCAAACTTAAGGTCACCGATTTCGGCCTCACCGCCTTCTCCGAGCACTTGAAGCAAGACGGATTGCTGCACACAACTTGTGGAACTCCGGCGTACGTCGCGCCGGAGGTCATCGGAAAGCAGGGATACGACGGCGCTAAGGCGGATTTGTGGTCTTGTGGAGTCATCCTCTTCGTTCTTCTCGCCGGATACCTTCCATTTCAGGACGACAACATGGTGGCGATGTACAAGAAGATTTACAGAGGCGACTTTAAGTGTCCGCCGTGGTTCTCTTCCGAAGCACGCCGCCTCATCACGAAGCTTCTCGATCCGAATCCGGTCACCAGAATCGGAATCGCGAAGATCACATCATCATCGTGGTTCAAGAAATCGGTACCGAAGACGGTGATTACGAAGGAAGAGCAAGAAAAAATCGATGAAAATTTCACGAAATCGAAGCAACCGGCGGAGACGTTGAACGCGTTCCACATAATATCCCTATCGGAAGGGTTCGATCTGTCGCCGTTGTTCGAGGAGAAGAAGAGGGAGGAGAAAGAGGAGATGAGATTCGCGACTTCATCGCCGGCGAGCAGTGTGATATCGAAGCTGGAGGAAGTTGCGAAGGCGGTGAAGTTCGACGTGAAGAAGAGCGAGTCGTGGGTTCGATTGCAGGGGCAAGAGAAGGGGAGAAAGGGGAAGCTGGCGATTGCGGCGGATATCTTCGCCGTGACGCCGTCGTTTGTGATGGTGGAGGTGAAGAAGGACAACGGAGACACTCTGGAATACAACCAATTCTGCAGTAAGGAGCTCCGGCCGGCGTTGAAGGACATTGTTTGGACATCTCCGACTGGGAACTCGACCCCGGCTTGA 1302 52.3 MADKGRDGGHASLLDGKYELGRLLGHGTFAKVYHARNLRTGKSVAMKVVGKEKIIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKIAKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDEDGKLKVTDFGLTAFSEHLKQDGLLHTTCGTPAYVAPEVIGKQGYDGAKADLWSCGVILFVLLAGYLPFQDDNMVAMYKKIYRGDFKCPPWFSSEARRLITKLLDPNPVTRIGIAKITSSSWFKKSVPKTVITKEEQEKIDENFTKSKQPAETLNAFHIISLSEGFDLSPLFEEKKREEKEEMRFATSSPASSVISKLEEVAKAVKFDVKKSESWVRLQGQEKGRKGKLAIAADIFAVTPSFVMVEVKKDNGDTLEYNQFCSKELRPALKDIVWTSPTGNSTPA 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46079680 46080981 + Lag0006816.1 Lac6g2847 612616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2847 433 SUPERFAMILY Protein kinase-like (PK-like) 15 287 IPR011009 -
Lac6g2847 433 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g2847 433 Gene3D Transferase(Phosphotransferase) domain 1 100 278 - -
Lac6g2847 433 CDD CIPK_C 304 419 - -
Lac6g2847 433 SMART serkin_6 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g2847 433 FunFam Non-specific serine/threonine protein kinase 9 299 - -
Lac6g2847 433 ProSiteProfiles NAF domain profile. 298 322 IPR018451 GO:0007165(InterPro)
Lac6g2847 433 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524(InterPro)
Lac6g2847 433 FunFam Non-specific serine/threonine protein kinase 10 97 - -
Lac6g2847 433 Gene3D Phosphorylase Kinase; domain 1 15 99 - -
Lac6g2847 433 Pfam NAF domain 301 360 IPR004041 GO:0007165(InterPro)
Lac6g2847 433 Gene3D Kinase associated domain 1, KA1 297 424 - -
Lac6g2847 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g2847 433 FunFam Non-specific serine/threonine protein kinase 298 423 - -
Lac6g2847 433 CDD STKc_SnRK3 17 271 - -
Lac6g2847 433 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g2847 433 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 418 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0602 Lac-Chr11:6119699 Lac6g2847 Lac-Chr6:46079680 3.10E-131 dispersed
Lac1g3263 Lac-Chr1:52479790 Lac6g2847 Lac-Chr6:46079680 6.80E-77 dispersed
Lac1g3421 Lac-Chr1:53677178 Lac6g2847 Lac-Chr6:46079680 1.80E-145 dispersed
Lac2g1835 Lac-Chr2:18324839 Lac6g2847 Lac-Chr6:46079680 3.20E-10 dispersed
Lac4g2822 Lac-Chr4:46840634 Lac6g2847 Lac-Chr6:46079680 2.90E-07 dispersed
Lac6g2847 Lac-Chr6:46079680 Lac9g2337 Lac-Chr9:42681407 1.60E-143 dispersed
Lac6g2847 Lac-Chr6:46079680 Lac3g0204 Lac-Chr3:1447243 1.10E-184 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86287 PF00069 Pkinase 2.70E-72 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2847 - - - 0.0