Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2849 ATGAGACTCACCAACTCCCTCCCCGACCTCCATAGCCACCGCCGTAACCGCCCGCCGGACACCGACGCCTCCCAACTCCACCACCACCAAAACCACCTTCAAACCTCCCATCTCCATCCTCCTCCCTTCTCCTCCGACGATTTCCTCGACCAAATCCTCTCCTCCATCCCCCCTCCCTGGGAACTCCCCGCCGGCCTCCCGAATCCCCACTCCGACCTCCCTCCCCAACCACCGCCGCCCCCGAATCCCGACAATGCCGCCTTTCAGATCGGCGACACCACTCCAGCGGCCAAAATGGCCATGGCCATGCTTCACCAGCAGTTACTCGCCACCGCGGCTGTAGATTCCGGCCTCCTTCCAATGCCTGGTAACGACATCGTTGAAGTCGAAGGCTCTTCGTCCTTCAAATGCCCTAATCCGATTATTGGCGACGATTCTGTTATTCCTTCTCTCTTCAACGAATTCGCCGGATTTCTGAACTCCTCCGGTTCCGGCCATAACCATAACCAGAATCAATCTCAGAGCTTCGGAGCTACAGTGTCAGTGAACACTCCACCGCCGGCAGGAGGTGCCGGCGGTGGTGCTGCAGCATCGGCGCAGCCGCGGCAGAGAGTCAGAGCTCGGAGAGGACAAGCCACAGATCCTCACAGCATAGCGGAAAGATTACGAAGAGAGCGAATTGCAGAGAGAATGAAAGCTCTGCAAGAACTGGTTCCCAACGCCAACAAGACAGACAAGGCTTCGATGCTGGATGAGATCATAGACTACGTAAAGTTCCTCCAGCTTCAAGTCAAAGTTCTGAGCATGAGCAGGTTGGGCGGTGCCACTGCAGCTATGCCTTCTCTTCTACCCGATATTTCCTCTCAGGGTGGGACTGACTGTAACCAGTCCAACGGAACCGGCGAGGCCGCCGGAGCTCCGTCGAGTAACGACGCCATGACGATAACGGAGCACCAGGTGGTGAAACTGATGGAGGAGGACATGGGCTCCGCCATGCAATACTTACAAGGCAAAGGCCTCTGCCTCATGCCCATCTCCCTCGCCTCCGCTATCTCCTCCGCCACGTGTCACAGCCGCCCTCTCACGGCGTCCAAGGGCGGAGGAGAATGCCCCACCTCCCCCAGCCTGTCGGCGTTGACCGTTCAGTCAACCGCCTTGGGTAACGGCATCGTTGACAGAGCCGTCAAAGACTCTGCCTCCGTTTCCCGGCCGTGA 1215 58.44 MRLTNSLPDLHSHRRNRPPDTDASQLHHHQNHLQTSHLHPPPFSSDDFLDQILSSIPPPWELPAGLPNPHSDLPPQPPPPPNPDNAAFQIGDTTPAAKMAMAMLHQQLLATAAVDSGLLPMPGNDIVEVEGSSSFKCPNPIIGDDSVIPSLFNEFAGFLNSSGSGHNHNQNQSQSFGATVSVNTPPPAGGAGGGAAASAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGATAAMPSLLPDISSQGGTDCNQSNGTGEAAGAPSSNDAMTITEHQVVKLMEEDMGSAMQYLQGKGLCLMPISLASAISSATCHSRPLTASKGGGECPTSPSLSALTVQSTALGNGIVDRAVKDSASVSRP 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46113787 46118858 - Lag0006818.1 Lac6g2849 612618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2849 404 MobiDBLite consensus disorder prediction 1 85 - -
Lac6g2849 404 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 26 350 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Lac6g2849 404 MobiDBLite consensus disorder prediction 288 311 - -
Lac6g2849 404 FunFam Transcription factor bHLH66 208 273 - -
Lac6g2849 404 MobiDBLite consensus disorder prediction 163 215 - -
Lac6g2849 404 MobiDBLite consensus disorder prediction 60 85 - -
Lac6g2849 404 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 211 260 IPR011598 GO:0046983(InterPro)
Lac6g2849 404 MobiDBLite consensus disorder prediction 7 27 - -
Lac6g2849 404 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 209 270 IPR036638 GO:0046983(InterPro)
Lac6g2849 404 SMART finulus 217 266 IPR011598 GO:0046983(InterPro)
Lac6g2849 404 Gene3D - 206 268 IPR036638 GO:0046983(InterPro)
Lac6g2849 404 Pfam Helix-loop-helix DNA-binding domain 216 261 IPR011598 GO:0046983(InterPro)
Lac6g2849 404 MobiDBLite consensus disorder prediction 163 182 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g2086 Lac-Chr3:25480451 Lac6g2849 Lac-Chr6:46113787 1.20E-42 dispersed
Lac4g2224 Lac-Chr4:41900211 Lac6g2849 Lac-Chr6:46113787 3.80E-43 dispersed
Lac5g1728 Lac-Chr5:34839994 Lac6g2849 Lac-Chr6:46113787 9.70E-67 dispersed
Lac5g2599 Lac-Chr5:44432947 Lac6g2849 Lac-Chr6:46113787 4.80E-13 dispersed
Lac6g0252 Lac-Chr6:2037952 Lac6g2849 Lac-Chr6:46113787 1.70E-13 dispersed
Lac6g2493 Lac-Chr6:42737424 Lac6g2849 Lac-Chr6:46113787 1.70E-14 dispersed
Lac6g2849 Lac-Chr6:46113787 Lac7g1062 Lac-Chr7:9396666 3.40E-15 dispersed
Lac6g2849 Lac-Chr6:46113787 Lac3g0200 Lac-Chr3:1412872 5.50E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24075 PF00010 HLH 1.50E-09 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2849 - - - 0.0