Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2850 ATGGCGGGTAATGGAGTTTTTGCAGAGATTCTCGACGGTGAAGTCTACAAATACTATTCCGAAGGAGAGTGGAAGAATTCCTCCTCGGGGAAGACCGTCGCCATTATCAACCCCACTACCAGGAAGACTCAATACAGAGTTCAAGCTTGTAACCAAGAGGAGGTTAATAAAGTGATGGAAATAGCTAAAACTGCTCAGAAATCGTGGGCAAAGACTCCATTGTGGAAGAGAGCTGAGCTTCTTCACAAGGCAGCTGCAATTTTGAAAGAACACAAGGCTCCAATTGCTGAGTGTTTGGTGAAGGAAATTGCAAAACCAGCTAAAGATGCTGTCACTGAGGTTGTGAGGTCTGGGGATCTTGTCTCATATTGTGCTGAAGAAGGTGTTAGGATCTTGGGAGAGGGGAAGTTCTTGGTTTCTGACAGTTTCCCTGGAAATGAAAGGACCAAATATTGCCTTACTTCCAAGATCCCACTTGGTGTGATTTTAGCCATTCCTCCATTCAACTATCCTGTCAATCTGGCTGTCTCAAAACTCGCCCCGGCTTTGATTGCTGGAAATTCTATCGTCCTCAAGCCTCCAACTCAGGGTGCTGTTTCTGCTCTCCACATGGTGCACTGCTTCCATCTAGCTGGTTTTCCTAAAGGCCTTATTAGTTGTGTCACTGGAAAAGGTTCTGAGATCGGTGATTTCCTCACGATGCATCCGGGTGTAGACTGTATAAGCTTCACTGGTGGAGATACCGGTATTGCAATTTCAAAGAAGGCAGGCATGATTCCTCTTCAGATGGAACTGGGAGGCAAAGACGCCTGCATTGTGCTCGAGGATGCAGATCTCGATTTAGTCGCTGCAAACATCATAAAGGGAGGCTTTTCTTACAGTGGCCAAAGGTGTACTGCTGTCAAGGTTGTTTTGGTAATGGAGTCTGTAGCAGATGCTTTGGTCGAGAAAGTAAATGCCCGTGTGGCTAAATTAACTGTCGGTGCCCCTGAAGACGACTCAGACATTACTCCGGTCGTGACCGAGTCGTCGGCGAATTTCATTGAAGGGTTGGTAATGGATGCAAAGGAAAAGGGAGCAACATTTTGCCAAGAGTACAGAAGAGAGGGCAATCTCATATGGCCCTTGTTGTTAGATAATGTTAGGCCTGATATGAGGATTGCATGGGAGGAACCTTTTGGACCAGTTTTGCCAGTCATAAGAATCAGTTCTATTGAAGAAGGAATCCATCATTGCAATGCTAGCAACTTTGGACTTCAGGGATGTGTCTTCACAAAGGACATCAACAAGGCGATATTGATAAGCGACGCAATGGAAACCGGGACAGTTCAAATCAACTCTGCGCCCGCTCGAGGACCCGACCATTTCCCATTCCAGGGAATCAAGGACAGTGGAATTGGTTCTCAAGGAGTCACCAACAGCATCAACATGATGACCAAAGTGAAGACCACAGTGATCAACTTGCCAACAGCTTCCTACACCATGGGTTAG 1491 46.34 MAGNGVFAEILDGEVYKYYSEGEWKNSSSGKTVAIINPTTRKTQYRVQACNQEEVNKVMEIAKTAQKSWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKLAPALIAGNSIVLKPPTQGAVSALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVDCISFTGGDTGIAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVNARVAKLTVGAPEDDSDITPVVTESSANFIEGLVMDAKEKGATFCQEYRREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRISSIEEGIHHCNASNFGLQGCVFTKDINKAILISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGVTNSINMMTKVKTTVINLPTASYTMG 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46130060 46133220 - Lag0006819.1 Lac6g2850 612619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2850 496 Pfam Aldehyde dehydrogenase family 24 483 IPR015590 GO:0016491(InterPro)
Lac6g2850 496 SUPERFAMILY ALDH-like 15 487 IPR016161 GO:0016491(InterPro)
Lac6g2850 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 457 IPR016163 GO:0016620(InterPro)
Lac6g2850 496 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 263 270 IPR029510 GO:0016491(InterPro)
Lac6g2850 496 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 267 457 - -
Lac6g2850 496 PANTHER ALDEHYDE DEHYDROGENASE 9 495 IPR051020 GO:0008911(PANTHER)
Lac6g2850 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 22 483 IPR016162 GO:0016491(InterPro)
Lac6g2850 496 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 22 281 - -
Lac6g2850 496 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 291 302 IPR016160 GO:0016491(InterPro)
Lac6g2850 496 CDD ALDH_F11_NP-GAPDH 15 487 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g2850 Lac-Chr6:46130060 Lac11g0932 Lac-Chr11:10144511 5.40E-39 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2850 K00131 - csv:101208699 969.148