Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2864 ATGTGTGTGACGGATGCAGAGCAGGTTGGGACTGAGAGGCAAACTTCTGGGGGTAATAATACCAAGCCATGGCCTATGCATTGTGAATTTTTGGAGAACCAGATGGGGAATCCTGATAAGGAGCCTGCTCTTAGTGGAAGTGGAACTAGCGACCGAACCACCCGTTCTGGGAATTCTTTTCCTCTTGAAAGCATTTCTGAGGACGCTGCAGTTATAGACAGGAAAGAGAACCCATCAACTTTTGTTCCTGCACTTAGATCAGGGGAATGGTCTGATATCGGAAAGCGTCCTTATATGGAGGACACTCATGTATGCATTCATGATATGGCTAAGAAGTTTGGCTGTAGTTTTCTCAATGAGGAAGCTGTCTCCTTCTATGGTGTATTCGATGGTCATGGAGGAAAAGGTGCTGCACAATTTGTTCGTGACCACTTGCCGAGAGTCATTGTTGAAGATTCCGACTTTCCCTTAGAGCTTGAAAAGGTGGTCACAAGGTCATTTATGGAGACTGATGCAGCTTTTGCTAGATCTTGCACTCTTGAAACATCTCTATCTTCTGGCACCACTGCACTGACTGCAATGATATTTGGAAGGTCATTACTTGTAGCAAACGCTGGTGATTGTCGAGCGGTACTGTCAAGACAAGGATGTGCAATAGAAATGTCTAAAGACCACAGGCCATGCTGCACAAAAGAAAGAAAGCGAATCGAGGCCTTGGGCGGATTCGTTGATGATGATTATCTAAACGGCCTCCTTGCGGTTACACGCGCTCTAGGAGATTGGCATCTTGAAGGAATGAAGGAAATGAGCGAAAGAGGTGGACCGTTAAGTGCCGAACCTGAACTTAGATTAATGACATTGACGAAGGAGGACGAGTTCTTGATCATAGGCAGCGATGGAATATGGGACGTCTTCACAAGTCAAAACGCTGTCGATTTTGCTCGGAGGAGGCTCCAAGAGCACAATGATGTGAAAGTTTGCTGCAAGGAAATAGTAGAGGAAGCCATAAAGAGAGGAGCAACAGACAACTTAACAGTAGTGTTGGTTAGCTTTCACTTGGAGCCACCTCCACCTGTAGTTTTTCAGAGGCCAAGATTTAGAAGAAGCATTTCAGCAGAGGGGCTTCAAAACCTCAAATTTCTGCTAGAAGGATAG 1155 45.54 MCVTDAEQVGTERQTSGGNNTKPWPMHCEFLENQMGNPDKEPALSGSGTSDRTTRSGNSFPLESISEDAAVIDRKENPSTFVPALRSGEWSDIGKRPYMEDTHVCIHDMAKKFGCSFLNEEAVSFYGVFDGHGGKGAAQFVRDHLPRVIVEDSDFPLELEKVVTRSFMETDAAFARSCTLETSLSSGTTALTAMIFGRSLLVANAGDCRAVLSRQGCAIEMSKDHRPCCTKERKRIEALGGFVDDDYLNGLLAVTRALGDWHLEGMKEMSERGGPLSAEPELRLMTLTKEDEFLIIGSDGIWDVFTSQNAVDFARRRLQEHNDVKVCCKEIVEEAIKRGATDNLTVVLVSFHLEPPPPVVFQRPRFRRSISAEGLQNLKFLLEG 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46261533 46266188 + Lag0006833.1 Lac6g2864 612633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2864 384 SMART PP2C_4 76 349 IPR001932 -
Lac6g2864 384 MobiDBLite consensus disorder prediction 43 63 - -
Lac6g2864 384 FunFam Probable protein phosphatase 2C 22 70 354 - -
Lac6g2864 384 Gene3D - 69 354 IPR036457 -
Lac6g2864 384 ProSiteProfiles PPM-type phosphatase domain profile. 86 351 IPR001932 -
Lac6g2864 384 PANTHER PROTEIN PHOSPHATASE 2C 73 351 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Lac6g2864 384 MobiDBLite consensus disorder prediction 1 64 - -
Lac6g2864 384 CDD PP2Cc 86 351 IPR001932 -
Lac6g2864 384 MobiDBLite consensus disorder prediction 8 22 - -
Lac6g2864 384 Pfam Protein phosphatase 2C 98 343 IPR001932 -
Lac6g2864 384 ProSitePatterns PPM-type phosphatase domain signature. 125 133 IPR000222 GO:0043169(InterPro)
Lac6g2864 384 SUPERFAMILY PP2C-like 76 352 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0068 Lac-Chr2:491992 Lac6g2864 Lac-Chr6:46261533 4.10E-87 dispersed
Lac4g2563 Lac-Chr4:44802793 Lac6g2864 Lac-Chr6:46261533 4.50E-73 dispersed
Lac6g2864 Lac-Chr6:46261533 Lac8g3063 Lac-Chr8:47318245 5.60E-36 dispersed
Lac6g2864 Lac-Chr6:46261533 Lac4g2737 Lac-Chr4:46274237 3.40E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24077 PF00481 PP2C 1.70E-68 CL0238 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2864 K14803 - csv:101210349 703.36