Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2877 ATGTCGGGCTGGGATGAAGGAGGAATCTACTACAGCGACCAAGCGCAGTCCCTCGGTGACGGAACCGGCATCGGCCGCAGCGGAGATGCCGACGAGAAGGCCACTCATCACTCCGTCCTCCGAAAATTCAAGGAGTTCATCCGTGGATTTGAAGTCGACAAGAATGTTTTCCCTTACAGAGAGAGCCTTCTCCACAATCCGAAGTATCTTCGTGTTGATATGGAGGATGTTCACGCTTTCGATTCCGATCTCCCGTCAAAGCTTCGATCTGCTCCTGCCGATTTCTTGCCCTTGTTTGAGACTGCTGCGGCGGAGGTTTTAATGAATCTGAAGACGAAGGTGGCTGGTGAGACTGGAGAAATGGTGGAGCCCGTGCCTGGGGATGTTCAAATTCTGCTAACGTCGAAGGAGGATCCAGTCTCGATGCGGTCACTTGGGGCTCAATACATTTCAAAACTAATTAAAATATCTGGAATCACAATCGCTGCGTCAAGGACCAAGGCAAAGGCAACATATGTGACCTTAATGTGCAAAAACTGTAGAAGTACACAAAGAGTTCCATGTCGGCCTGGACTTGGAGGGGCAATTGTCCCTCGATCATGTAATCATATACCTCAGGCCGGAGAAGAACCTTGCCCACTGGATCCTTGGATTGTGGTTCCTGATAAGAGCATGTATGTTGATCAACAGACTTTAAAACTGCAGGAAAACCCAGAAGATGTACCTACTGGGGAACTTCCTAGGAACATGCTTCTATCAGTAGATCGTCATCTTGTTCAAACAATTGTTCCAGGCACTAGATTGACCATCATGGGGATATACAGTATTTATCAAGCTGCCAATTCTTCCGCATCCCACAAAGGAGCAGTTGCAATCAGACAGCCTTATATCAGGGTAGTAGGAATTGAAGAATCTAATGAAGCTAACTCTCGGGGCCCTGCATCTTTCACAGCAGAAGATATAGAAGAGTTCAAAAAATTTGCAGCAGAGCCTGATGTCTATAAAAGCATATGTTCAAAGATTGCCCCCTCTATATTTGGTCATGATGATGTGAAGAAGGCTGTCGCTTGTCTTCTATTTGGAGGATCCAGGAAGAATTTGCCAGATGGGGTTAAGTTAAGAGGTGACATTAATGTATTACTCTTGGGGGACCCGTCTACAGCTAAATCACAATTTCTCAAGTTTGTTGAGAAGACAGCTCCAGTTGCTGTCTATACTTCTGGAAAAGGTTCATCAGCTGCTGGTCTTACAGCTTCAGTGATACGAGATAGCAGCTCTCGAGAGTTTTATCTTGAAGGAGGTGCGATGGTTTTGGCTGATGGTGGTGTTGTCTGCATTGATGAGTTTGACAAAATGAGATCAGAGGATAGAGTTGCAATTCATGAAGCCATGGAACAACAGACAATATCAATTGCCAAAGCAGGAATAACAACGGTTCTTAATTCCAGAACCTCAGTGCTTGCGGCTGCTAATCCTCCATCGGGACGTTATGATGATCTTAAGACGGCACAGGATAACATTGATTTGCAGACTACAATTCTCTCCAGATTTGATTTAATTTTCATCGTGAAAGATATAAGGATGTACAGCCAAGATAAGATTATAGCAAGCCACATAATAAAAGTTCATGCATCTGCTGATGCAACCTTGGGTGAAAGTAGAGCTTCTAAAGAAGAGAATTGGCTAAAGAGGTATCTTCAGTATTGTCGAACTCAATGTCATCCCCGTTTGTCAGAATCTGCATCCACAATGTTGCAGAATAATTATGTTAAAATCAGACAGGACATGAGACAACAAGCAAACGAAACAGGGGAGGCTGCTGCTATTCCGATTACCGTAAGGCAGCTGGAAGCTATTGTAAGGTTAAGCGAGGCACTCGCAAAAATGAAGTTGTCCCATGTTGCCACTGAGGAAAATGTGCAGGAAGCCATTAGACTTTTTACTGTGTCCACGATGGACGCAGCACGCTCAGGGATTCATCAGCAAGTAAATCTGACTCCTGAAATGGCTAATGAAATAAAGCAAGCAGAAACACAGATAAAGAGAAGAATAGGAATTGGCAACCACATATCTGAGAGAAGGCTGATTGACGAGCTCACTAAAATGGGGATGAACGAGTCAACTGTGAGAAGAGCTCTGATCATTATGCACCAGAGAGATGAAGTTGAATATAAAAGAGAAAGGCGCGTCATTTTCCGCAAGGCGTGA 2208 44.47 MSGWDEGGIYYSDQAQSLGDGTGIGRSGDADEKATHHSVLRKFKEFIRGFEVDKNVFPYRESLLHNPKYLRVDMEDVHAFDSDLPSKLRSAPADFLPLFETAAAEVLMNLKTKVAGETGEMVEPVPGDVQILLTSKEDPVSMRSLGAQYISKLIKISGITIAASRTKAKATYVTLMCKNCRSTQRVPCRPGLGGAIVPRSCNHIPQAGEEPCPLDPWIVVPDKSMYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTIMGIYSIYQAANSSASHKGAVAIRQPYIRVVGIEESNEANSRGPASFTAEDIEEFKKFAAEPDVYKSICSKIAPSIFGHDDVKKAVACLLFGGSRKNLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPVAVYTSGKGSSAAGLTASVIRDSSSREFYLEGGAMVLADGGVVCIDEFDKMRSEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYSQDKIIASHIIKVHASADATLGESRASKEENWLKRYLQYCRTQCHPRLSESASTMLQNNYVKIRQDMRQQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSHVATEENVQEAIRLFTVSTMDAARSGIHQQVNLTPEMANEIKQAETQIKRRIGIGNHISERRLIDELTKMGMNESTVRRALIIMHQRDEVEYKRERRVIFRKA 735
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 46398013 46403247 + Lag0006846.1 Lac6g2877 612646
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2877 735 ProSitePatterns MCM family signature. 442 450 IPR018525 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro)
Lac6g2877 735 Pfam MCM AAA-lid domain 561 650 IPR041562 -
Lac6g2877 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 343 651 IPR027417 -
Lac6g2877 735 Gene3D - 169 227 - -
Lac6g2877 735 SMART mcm 138 652 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lac6g2877 735 FunFam DNA helicase 34 122 - -
Lac6g2877 735 CDD MCM5 337 650 - -
Lac6g2877 735 FunFam DNA helicase 169 227 - -
Lac6g2877 735 ProSiteProfiles MCM family domain profile. 333 539 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lac6g2877 735 Pfam MCM P-loop domain 320 543 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lac6g2877 735 Gene3D - 31 122 - -
Lac6g2877 735 FunFam DNA helicase 314 665 - -
Lac6g2877 735 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 293 305 IPR008048 GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Lac6g2877 735 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 143 158 IPR008048 GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Lac6g2877 735 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 169 181 IPR008048 GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Lac6g2877 735 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 569 584 IPR008048 GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Lac6g2877 735 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 645 662 IPR008048 GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Lac6g2877 735 Gene3D - 142 277 IPR012340 -
Lac6g2877 735 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 32 724 IPR031327 GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006270(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:0043138(PANTHER)
Lac6g2877 735 Gene3D - 314 670 IPR027417 -
Lac6g2877 735 Pfam MCM5, C-terminal domain 675 733 IPR054125 -
Lac6g2877 735 SUPERFAMILY Nucleic acid-binding proteins 42 299 IPR012340 -
Lac6g2877 735 PRINTS Mini-chromosome maintenance (MCM) protein family signature 486 498 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lac6g2877 735 PRINTS Mini-chromosome maintenance (MCM) protein family signature 434 448 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lac6g2877 735 PRINTS Mini-chromosome maintenance (MCM) protein family signature 374 389 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lac6g2877 735 PRINTS Mini-chromosome maintenance (MCM) protein family signature 462 475 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lac6g2877 735 PRINTS Mini-chromosome maintenance (MCM) protein family signature 513 521 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lac6g2877 735 Pfam MCM OB domain 142 277 IPR033762 -
Lac6g2877 735 Pfam MCM N-terminal domain 41 117 IPR027925 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0230 Lac-Chr12:2539126 Lac6g2877 Lac-Chr6:46398013 1.70E-64 dispersed
Lac1g0156 Lac-Chr1:2881497 Lac6g2877 Lac-Chr6:46398013 1.50E-18 dispersed
Lac3g2631 Lac-Chr3:40668012 Lac6g2877 Lac-Chr6:46398013 4.80E-16 dispersed
Lac4g2531 Lac-Chr4:44520817 Lac6g2877 Lac-Chr6:46398013 1.40E-83 dispersed
Lac6g2877 Lac-Chr6:46398013 Lac7g1551 Lac-Chr7:17284273 2.80E-92 dispersed
Lac6g2877 Lac-Chr6:46398013 Lac7g1919 Lac-Chr7:28638726 1.20E-146 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2877 K02209 - csv:101211822 1398.26