Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2882 ATGATTGTGGAGGATCGAAGGGCTAATTTGTTGGGTGAAAATGGGGATATGGACCAGTTCCCTATTGGTATGCGTGTTCTTGCTGTGGATGATGACCCCATTTGCCTCAAGGTTTTGGAGAATTTGCTTCGTAAATGTCAATATCATGTTACAACAACCAATCAGGCGGTTCAGGCACTTAAAATGTTGAGGGAGAACAGAAACAAGTTTGATCTGGTTATCAGCGACGTTAACATGCCGGACATGGATGGTTTTAAGCTCCTTGAGCTAGTAGGCCTTGAAATGGACTTACCTGTTATCATGCTGTCTGCGCATAGCGATACCGAACTTGTAAAGAAGGGAGTTACTCACGGTGCTTGTGACTATTTGCTGAAACCTGTTCGAATTGAGGAACTGAAGAATATATGGCAACATGTCCTTCGGAGAAAGAAGTCCTCTGCTAAGAACCAAAATAAGTGGACTAATGGAAATGACACTTGTCAAACTGTTGAAGTTGCAAAAGGTTTTCCATCTGCAGTCATTGCTGATAACGGAAAACCTGGTAAAAGGCGGAAAGACCAAGACGACGATGAGGAAGGAGGTGAAGAAGAGAGTACTTACGAGAATGACGACTCCACCAACCAAAAAAAGCGAAGGGTAGTTTGGACAGGAGAGTTGCACAGGAAGTTTATTGCAGCTGTTAATCATTTGGGCTATGAAAAGGCTGTTCCTAAAAAGATCCTTGATCTGATGAATGATGAAGACCTTACAAGAGAAAATGTGGCTAGCCATCTTCAGAAATACAGACAATACCTTAAAAAAATGTGTACTAAGGAAGCTCAGCAATGTAACATGATGGCTGCATTTGGAGGTAAAGACTCCTCCTTCCGGCCCATGGCTTCACTCAATGGATTTTCAATAACTGGAACAGGAAGGCTTTCAAACGCCACATTTTCGTCGTATCCCTCTCGAGAAATTGTTGATAGATTAAATTCTACTGCTGGGTTGAGCTTACATGGAATTGCTTCCTCTGGAATGATCCAACAGGGTACTTCCCATAACTTGAGTAGCTCATTAAATATACTTAGGAAACCCCATCCAGATCTCTTGCTTGCAAACCAACCTCCGAGCATATTCAACGGTATTTCAACGTCATCGAATCACATCCAGTTGCATCGGGACAAACACACTATGCCATTTAAAGGGTCTAATTTGATAAATGATGCCTCGAGTTTTACAGTTTCCACCAGCTTCCCTGATGCTAGAGTGGCTGTTGGTAGCTCGAGCAATTATGACTTCAGTGTTTCGAGCCATCAGTTGATGTTACAAGGACATAAACAACAGATTCATGGCAGTGGAGAATTTGGAAACCAATCTTCTCTTAAGGTATCTTTAAACAACCCAGAAGACAGCGGCGCAGGCGTTTCTAATATTTTGGGCCATGGTCAGTCTAACAAAAATTGGCAGGGTTCAATCCAGCTACCCAAGTTTTCATCTAATGTCTCACTCACTGGAATTTACCCTCCTGATGGAATGCCTGCTATTAATTTGACAATTTCTTCGGCTCAGTCCGATAATGACAACTTTCCTGTTGGTTTCCCTTCAACAAGTGTGGATTCGAGTTCTCAGCTTGATTTGAAAGGGGAGACACAATGCTACCAAGAACTAATTGGTAGTGTTGTTGAAGCCATGAATGGAAAATCAAAACAACAATGGGAAGCAGCGAAACCGGATTACTATGGGAACCATAGTTCCATTGTGAGAAACTCTCTAGTTTCTGGGAATAATGTTGCAGATCCCTTGAACCAGAGTGCAGATCAGAATAATGCAGTTTGTCTTGAAAACATTGGCAGCTCTTTGACCAACCAATTGAACAATGGTGCTCCAACCTTCATTCAGCACGGTGCGGAAATATCGACGACAGACACTTGGATGAACTACGATGGGAAGGTTCTCGTGGATCCAACAAAACTACAGAATGGATTTGCAAATTCTAGTTTTAATTCCTTGGATGAATTGGTGAATGCTCTGATGAAACAGGATCAAGATCAATCTATTCAAATAAATGACGAATTTGGATTTGATGCTCAATCTCTCGGGTCGTCGTGTATATGA 2094 42.02 MIVEDRRANLLGENGDMDQFPIGMRVLAVDDDPICLKVLENLLRKCQYHVTTTNQAVQALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVKKGVTHGACDYLLKPVRIEELKNIWQHVLRRKKSSAKNQNKWTNGNDTCQTVEVAKGFPSAVIADNGKPGKRRKDQDDDEEGGEEESTYENDDSTNQKKRRVVWTGELHRKFIAAVNHLGYEKAVPKKILDLMNDEDLTRENVASHLQKYRQYLKKMCTKEAQQCNMMAAFGGKDSSFRPMASLNGFSITGTGRLSNATFSSYPSREIVDRLNSTAGLSLHGIASSGMIQQGTSHNLSSSLNILRKPHPDLLLANQPPSIFNGISTSSNHIQLHRDKHTMPFKGSNLINDASSFTVSTSFPDARVAVGSSSNYDFSVSSHQLMLQGHKQQIHGSGEFGNQSSLKVSLNNPEDSGAGVSNILGHGQSNKNWQGSIQLPKFSSNVSLTGIYPPDGMPAINLTISSAQSDNDNFPVGFPSTSVDSSSQLDLKGETQCYQELIGSVVEAMNGKSKQQWEAAKPDYYGNHSSIVRNSLVSGNNVADPLNQSADQNNAVCLENIGSSLTNQLNNGAPTFIQHGAEISTTDTWMNYDGKVLVDPTKLQNGFANSSFNSLDELVNALMKQDQDQSIQINDEFGFDAQSLGSSCI 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46483755 46487496 + Lag0006851.1 Lac6g2882 612651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2882 697 NCBIfam myb-like DNA-binding domain, SHAQKYF class 210 263 IPR006447 GO:0003677(InterPro)
Lac6g2882 697 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Lac6g2882 697 Gene3D - 206 269 - -
Lac6g2882 697 SUPERFAMILY CheY-like 23 150 IPR011006 -
Lac6g2882 697 CDD REC_typeB_ARR-like 26 140 - -
Lac6g2882 697 PIRSF RR_ARR_type-B 4 697 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Lac6g2882 697 Gene3D - 24 199 - -
Lac6g2882 697 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Lac6g2882 697 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Lac6g2882 697 MobiDBLite consensus disorder prediction 171 208 - -
Lac6g2882 697 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 336 IPR045279 GO:0009736(InterPro)
Lac6g2882 697 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 207 266 IPR017930 -
Lac6g2882 697 SUPERFAMILY Homeodomain-like 208 268 IPR009057 -
Lac6g2882 697 Pfam Myb-like DNA-binding domain 212 262 IPR001005 -
Lac6g2882 697 FunFam Two-component response regulator 206 269 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0557 Lac-Chr2:4210486 Lac6g2882 Lac-Chr6:46483755 2.40E-114 dispersed
Lac3g0598 Lac-Chr3:4642751 Lac6g2882 Lac-Chr6:46483755 4.70E-15 dispersed
Lac6g0714 Lac-Chr6:6074972 Lac6g2882 Lac-Chr6:46483755 1.40E-62 dispersed
Lac6g2882 Lac-Chr6:46483755 Lac7g0922 Lac-Chr7:7732095 1.70E-67 dispersed
Lac3g0306 Lac-Chr3:2178269 Lac6g2882 Lac-Chr6:46483755 9.10E-51 transposed
Lac3g0194 Lac-Chr3:1367917 Lac6g2882 Lac-Chr6:46483755 1.80E-162 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24078 PF00072 Response_reg 5.20E-26 CL0304 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2882 K14491 - csv:101203718 1084.71