Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2902 ATGGAACCCGCCGACTCCACCAATGGCGATGACGAATCCATTATCACTCCCTTGCTTGCTCCTCAGAAATCACTTGCCAATTCTTCCTCACAGGTCGCCATTGTTGGGGCTAATGTCTGCCCCATTGAGAGCCTTGATTACGAGATTTTTGATAATGAGTTCTTCATGCAAGATTGGAGGAGTCGTGAAGATTTCCAGATATTTCAATACTTGGTTATGAAGTGGCTGTCATGCTTCTTGATTGGTCTGATTATGGGTCTTGTTGGCTTTTTCAACAACCTGGCTGTGGAGAATATTTCAGGGAAGAAGTTTGTGGTCACTTCGAATATGATGCTTGAGGGCAGGTATGGGATGGCTTTTCTTGTTTTCTCTGTTTCCAATTTAGTTCTCACCCTATTCGCATCTGTCATTACGGCATTGATCTGCCCCCAAGCAGCCGGCTCAGGTATACCAGAAGTAAAGGCTTATCTGAATGGCGTGGACGCCCCTGAAATATTATCGCCCCGGACATTGTTAGTGAAGATTATAGGCAGCATTTCTATTGTTTCCTCGTCTATGATCGTTGGAAAAGCTGGGCCTATGGTACATACAGGGGCATGTGTTGCATCCTTGGTAGGTCAGGGGGGTTTCAACATATTTGGTTTAACATGGAGATGGCTATACCATCTCAAGAATGATCGAGATAGGCGAGATCTTGTAACATGTGGAGCTGCCGCTGGAATAGCTGCTGCTTTTCGTGCTCCTGTTGGTGGTGTGTTGTTTGCTTTTGAAGAGATGGCATCTTGGTGGAGAAGTGCCCTTCTGTGGCGAGCATTTTTCACAACGGCTATCGTTGCTGTGGTATTACGCTCACTGATTGACATTTGTTTAAATGGATTATGTGGATTATTTGGTAAAGGAGGACTTATAATATTTGATACCTACTCAGACTTTCCTACATATCACCTCAAAGATCTACCTCCTGTGCTTGCCCTTGCTTTTATTGGAGGCCTACTAGGAAGTTTATATAATTTTCTTTTAAGTAAAGTTCTTCGCATTTACAATCTCATACACGAGAAAGGCATTGTTTACAAGATTTTACTGGCTTGCTCTGTCTCAATTTTCACATCCTGTCTTCTTTTCGGATTACCATGGATTGCGTCGTGCCAACCTTGCCCATCAAGTGCTCGAGAAATTTGTCCTACAATAGGCCGATCTGGTAACTTCAAGAAGTTTCAGTGTGTTCCTGGTCACTACAATGATCTTGCAAGTCTCATATTTAACACCAATGACGATGCCATAAAAAATCTCTTCAGCCAGGACACAGACTCTGAGTTCCAGTTCTCATCAATGCTCACATTTTTCATTACTTGTTTTTCTTTGAGCATTCTCAGTTATGGGACAGTTGCTCCTGTTGGCCTGTTTGTCCCTGTTATTGTGACTGGAGCTTCTTATGGTCGTTTCGTTGGAATGGTTGTCGGTCCATACACAAACCTGAGCCATGGCTTCTTTGCCATATTGGGTGCCGCTTCGTTTCTCGGGGGGTCAATGAGGACAACAGTTTCTCTCTGTGTTATTATGCTTGAATTGACCAATAACTTGTTGTTGTTGCCTTTAGTAATGTTGGTTCTCCTTATTTCCAAGACAGTAGCTGATGCTTTCAACAGTAATATATATAACCTGATCATGAAAGCGAAAGGATTTCCTTATCTAGAAGGACATGTTGAGCCTTACATGAGGCAGCTGACTGTTGCGGATGTGTTAACGAGTCCACTTCAATTATTGCACGGCATTGAGAAGGTTCGTAATGTAGTAAACGTTCTCAAATGGACGAGCCATCACGGATTTCCTGTCATTGACGAGCCTCCTTTCTCTGAATTTCCTGTTTTATATGGCCTAATTCTCAGAGCCCATCTTATTATGTTGCTAAAGAAGAAAGCTTTCTTGCCCATTCCAATACTAGGATCAAAACAGCTATTCTCAGCTGATGATTTTGCAAAGATGGGTTCGGGCGAGGTTGATAGGATTGAAGATGTACAATTGACTGATGAAGAGATGGAGATGTTCATTGATCTACATCCGTTCGCCAATACTTCGCCTTGTACCGTCTTGGAGACAATGTCACTAGCAAAGGCTCTTCAAATTTTTCGAGAAACTGGTTTAAGACACATGCTGGTGATACCCAAGGTCCCTGGGAGATCGCCCGTGGTTGGTGTATTGACTCGGCACGACTTCATGCCAGATTACATTCTGAGTTTGCATCCATTGCTAGAGAAGAGCAGATGGAAGAGATTAAGAATCAAATTTCACATGAAGAAAAAGTTCTTCTAG 2310 42.9 MEPADSTNGDDESIITPLLAPQKSLANSSSQVAIVGANVCPIESLDYEIFDNEFFMQDWRSREDFQIFQYLVMKWLSCFLIGLIMGLVGFFNNLAVENISGKKFVVTSNMMLEGRYGMAFLVFSVSNLVLTLFASVITALICPQAAGSGIPEVKAYLNGVDAPEILSPRTLLVKIIGSISIVSSSMIVGKAGPMVHTGACVASLVGQGGFNIFGLTWRWLYHLKNDRDRRDLVTCGAAAGIAAAFRAPVGGVLFAFEEMASWWRSALLWRAFFTTAIVAVVLRSLIDICLNGLCGLFGKGGLIIFDTYSDFPTYHLKDLPPVLALAFIGGLLGSLYNFLLSKVLRIYNLIHEKGIVYKILLACSVSIFTSCLLFGLPWIASCQPCPSSAREICPTIGRSGNFKKFQCVPGHYNDLASLIFNTNDDAIKNLFSQDTDSEFQFSSMLTFFITCFSLSILSYGTVAPVGLFVPVIVTGASYGRFVGMVVGPYTNLSHGFFAILGAASFLGGSMRTTVSLCVIMLELTNNLLLLPLVMLVLLISKTVADAFNSNIYNLIMKAKGFPYLEGHVEPYMRQLTVADVLTSPLQLLHGIEKVRNVVNVLKWTSHHGFPVIDEPPFSEFPVLYGLILRAHLIMLLKKKAFLPIPILGSKQLFSADDFAKMGSGEVDRIEDVQLTDEEMEMFIDLHPFANTSPCTVLETMSLAKALQIFRETGLRHMLVIPKVPGRSPVVGVLTRHDFMPDYILSLHPLLEKSRWKRLRIKFHMKKKFF 769
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 46637919 46642378 + Lag0006871.1 Lac6g2902 612671
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2902 769 Pfam Voltage gated chloride channel 131 545 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac6g2902 769 Gene3D Clc chloride channel 66 564 - -
Lac6g2902 769 SUPERFAMILY Clc chloride channel 52 566 IPR014743 -
Lac6g2902 769 CDD CBS_pair_voltage-gated_CLC_euk_bac 576 741 - -
Lac6g2902 769 Pfam CBS domain 691 739 IPR000644 -
Lac6g2902 769 PRINTS Plant CLC chloride channel signature 48 56 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lac6g2902 769 PRINTS Plant CLC chloride channel signature 291 298 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lac6g2902 769 PRINTS Plant CLC chloride channel signature 273 283 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lac6g2902 769 PRINTS Plant CLC chloride channel signature 415 431 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lac6g2902 769 PRINTS Plant CLC chloride channel signature 259 267 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lac6g2902 769 ProSiteProfiles CBS domain profile. 689 749 IPR000644 -
Lac6g2902 769 SMART cbs_1 692 745 IPR000644 -
Lac6g2902 769 SMART cbs_1 584 637 IPR000644 -
Lac6g2902 769 FunFam Chloride channel ClC3 66 383 - -
Lac6g2902 769 SUPERFAMILY CBS-domain pair 567 739 IPR046342 -
Lac6g2902 769 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 27 740 IPR051280 GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER)
Lac6g2902 769 PRINTS Chloride channel signature 143 160 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac6g2902 769 PRINTS Chloride channel signature 551 565 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac6g2902 769 PRINTS Chloride channel signature 174 193 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac6g2902 769 PRINTS Chloride channel signature 238 257 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac6g2902 769 PRINTS Chloride channel signature 463 483 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac6g2902 769 PRINTS Chloride channel signature 513 532 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac6g2902 769 PRINTS Chloride channel signature 495 511 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac6g2902 769 Gene3D - 565 741 IPR046342 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g1786 Lac-Chr5:35672501 Lac6g2902 Lac-Chr6:46637919 1.30E-260 dispersed
Lac6g2902 Lac-Chr6:46637919 Lac8g2973 Lac-Chr8:46627670 4.70E-199 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2902 K05016 - csv:101216071 1383.62