Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2910 ATGGACGAAAACGATAAGTGTGGCTGTTGGGCTGTCCTTAAACGCACCGTTTCAGATGCTTCCAAGTCCTCTCCTTCTTCCAAACACTCCATTCCTCGCGTCACCTTGCTTTACGATTCAGCTACCGAGACGCGCTACCTAAATGCCAGCAGCCGAGATTTTTGCCCTCCGGCCGAAGCACGGCTATCCTTCGACAATGTCCCGCCGCCGCCGCCGCCGCCGTCCTCCGAGGACAGATATAAACGCCAGTTACTAAAATTTTCATTTCAGGAGCTGAGATCGGCGACCGGGAATTTCCGACCGGATAGCATACTCGGAGAAGGAGGGTTTGGATTCGTCTTCAAAGGATGGATCGAAGAGAATGGCACAGCGCCGGCCAAACCTGGATCGGGAATCACCGTCGCAGTCAAAAGCTTGAAGCCGGATGGTCTTCAAGGCCACAGAGAATGGGAGGCTGAGGTTAGCTTTCTTGGACAGCTTCACCATCCCAATCTTGTTAAACTTATTGGATACTGTATTGAAGATGATCAGAGGCTTCTTGTATATGAATTTATGACGCGTGGTAGTCTTGAAAATCATCTTTTCAGAAGGACTATACCTCTTCCATGGTCAAACAGGACTAAAATTGCGCTTGCTGCAGCCAAAGGCTTGGCCTTCCTCCACAATGGTCCAGAACCTGTCATATATAGAGATTTCAAGACATCAAACATATTGCTTGATACGGAATACAATGCAAAGCTTTCGGATTTTGGTTTGGCGAAGGCTGGGCCCCAGGGAGACAAAACACACGTTTCCACCAGAGTAGTTGGAACATATGGCTATGCTGCACCTGAATATCTAATGACGGGCCATTTGACGTCAAAAAGTGATGTCTATAGCTTCGGAGTTGTCCTACTCGAAATCTTAACTGGGAGGAGATCAATGGACAAGAAACGTCCAAGTGGTGAGCAGAACCTAGTGTCATGGGCTAGGCCATATTTAGATGACAAAAGGAAGCTTTACCATATAGTGGACCCTCGCTTGGAGCTTAACTACTCCATCCAGGGGGTTCAGAAAGTCTCTCGACTAGCTTCTCACTGCATAAGTAGAGATCCAAAATCTCGTCCCACCATGGAAGAAGTTGTCAAGGTTCTCATTCCCCTACAGGACCTTAACGACCTCGCCATCCTGACATATCATTCGCGCTTGTCTCAGCAAGGTCGACGAAAGAAGAAATCAGATGGGCTGCACCAGCTAACTTACACTCAGTCAAGAAACATTAGAACCTCTCCTTTGAATGTCGGAATCGTTCATCGTCATCGATGA 1305 47.89 MDENDKCGCWAVLKRTVSDASKSSPSSKHSIPRVTLLYDSATETRYLNASSRDFCPPAEARLSFDNVPPPPPPPSSEDRYKRQLLKFSFQELRSATGNFRPDSILGEGGFGFVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWEAEVSFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTIPLPWSNRTKIALAAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYLMTGHLTSKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLDDKRKLYHIVDPRLELNYSIQGVQKVSRLASHCISRDPKSRPTMEEVVKVLIPLQDLNDLAILTYHSRLSQQGRRKKKSDGLHQLTYTQSRNIRTSPLNVGIVHRHR 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46718557 46725014 + Lag0006879.1 Lac6g2910 612679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2910 434 FunFam Serine/threonine-protein kinase BIK1 73 184 - -
Lac6g2910 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g2910 434 MobiDBLite consensus disorder prediction 60 79 - -
Lac6g2910 434 MobiDBLite consensus disorder prediction 63 77 - -
Lac6g2910 434 FunFam Probable serine/threonine-protein kinase PBL8 185 398 - -
Lac6g2910 434 Gene3D Transferase(Phosphotransferase) domain 1 185 394 - -
Lac6g2910 434 Pfam Protein tyrosine and serine/threonine kinase 103 378 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g2910 434 ProSitePatterns Protein kinases ATP-binding region signature. 105 137 IPR017441 GO:0005524(InterPro)
Lac6g2910 434 PANTHER OS01G0588500 PROTEIN-RELATED 75 382 IPR050823 -
Lac6g2910 434 Gene3D Phosphorylase Kinase; domain 1 74 184 - -
Lac6g2910 434 SUPERFAMILY Protein kinase-like (PK-like) 82 381 IPR011009 -
Lac6g2910 434 ProSiteProfiles Protein kinase domain profile. 99 396 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g2910 434 CDD STKc_IRAK 105 381 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g2910 Lac-Chr6:46718557 Lac8g2666 Lac-Chr8:44158979 1.20E-140 dispersed
Lac3g0772 Lac-Chr3:6186824 Lac6g2910 Lac-Chr6:46718557 8.80E-192 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86289 PF07714 PK_Tyr_Ser-Thr 1.10E-48 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2910 - - - 0.0