Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2925 ATGTCAAGCTGCATCAACAGTGCACAAGAACAACTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGCAATCTCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAACATGGCTGCTGCTTTTCAATCTCTCTCATGGCAAAATTCTCAGGCATCAAACCACAGCCACAGTGGCAGTGCAGCTGATTACAGGGTTGAATTGGGCTCATCATCAAAATGCAACAACAAAATGAAGATGAGAGCTCCAATTAAAAACCCTACAAATGATGATCAAAGGGTCATCAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAAATAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACACATTCATTTTGGCCTCATGCTGGAAACCAACAATCTGCCGACTAAGAATGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGA 573 43.98 MSSCINSAQEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSHSGSAADYRVELGSSSKCNNKMKMRAPIKNPTNDDQRVINRPPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGLMLETNNLPTKNDGSEKHLMSVPGLHY 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46896306 46899634 + Lag0006894.1 Lac6g2925 612694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2925 190 Gene3D High mobility group box domain 90 159 IPR036910 -
Lac6g2925 190 FunFam axial regulator YABBY 5-like 102 160 - -
Lac6g2925 190 CDD HMG-box_SF 118 154 - -
Lac6g2925 190 Pfam YABBY protein 8 164 IPR006780 GO:0007275(InterPro)
Lac6g2925 190 PANTHER PROTEIN YABBY 6-RELATED 8 173 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Lac6g2925 190 SUPERFAMILY HMG-box 103 157 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0386 Lac-Chr13:2745920 Lac6g2925 Lac-Chr6:46896306 7.70E-17 transposed
Lac9g2746 Lac-Chr9:45626609 Lac6g2925 Lac-Chr6:46896306 1.40E-50 transposed
Lac3g0792 Lac-Chr3:6309430 Lac6g2925 Lac-Chr6:46896306 4.00E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24080 PF04690 YABBY 5.10E-71 CL0114 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2925 K25796 - csv:101219877 370.548