Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2931 ATGGTGCCATCAAAGAAGTTCAGAGGTGTTAGGCAACGACACTGGGGATCTTGGGTTTCTGAAATTCGCCACCCTCTTCTGAAGAGGAGAGTTTGGTTAGGGACGTTTGAGACGGCGGAGGAGGCGGCGAGAGCCTACGATCAGGCCGCCGTGTTAATGAGCGGTCGGAATGCGAAAACCAACTTTCCGATGAGCCAAACGGCGACGTCGGAATTAGAAAAACCAGACAAGATCCATTCTCCATCTTCTCCCAAGGGCTTATCGGAGATCCTCCACGCCAAGCTCCGAAAATGCAGCAAAGCGCCGTCGCCGTCGATGACGTGTCTCCGACTCGACACCGAAAATTCCCACATCGGCGTTTGGCAGAAACGCGCCGGCCAACGCTCCGACTCCAGCTGGGTCATGACCGTTCACCTCGGTAAGAACAACTCCGCCGTTTCTGCCGCCGCTTCCGGCGGCAATGACGACGGTGGACGGTTGCGGAACAACAACAACAATGGTTCTTTTTCGAATTTGAGCTCGCAAGGTGGAGCTCCAATGGCGGCAGTTGGACCCCACATGAGAAGCTTGCAAATGGATGAAGAAGAAAGAATTGCACTGCAAATGATTGAGGAGTTGCTGAGCAGAAATTACAGTAACCCATCTGACATTCAAGATCAAGATCAAGGGGAACCAAGTTTTTACCCTCTCTAA 693 52.53 MVPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNFPMSQTATSELEKPDKIHSPSSPKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGVWQKRAGQRSDSSWVMTVHLGKNNSAVSAAASGGNDDGGRLRNNNNNGSFSNLSSQGGAPMAAVGPHMRSLQMDEEERIALQMIEELLSRNYSNPSDIQDQDQGEPSFYPL 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46959924 46961224 + Lag0006900.1 Lac6g2931 612700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2931 230 Pfam AP2 domain 6 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g2931 230 MobiDBLite consensus disorder prediction 148 183 - -
Lac6g2931 230 CDD AP2 5 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g2931 230 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g2931 230 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g2931 230 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g2931 230 MobiDBLite consensus disorder prediction 210 230 - -
Lac6g2931 230 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g2931 230 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g2931 230 MobiDBLite consensus disorder prediction 157 177 - -
Lac6g2931 230 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 137 IPR050913 -
Lac6g2931 230 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677(InterPro)
Lac6g2931 230 FunFam Ethylene-responsive transcription factor 2 5 64 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0607 Lac-Chr6:5159312 Lac6g2931 Lac-Chr6:46959924 1.50E-25 dispersed
Lac6g0608 Lac-Chr6:5165481 Lac6g2931 Lac-Chr6:46959924 7.20E-26 dispersed
Lac6g2931 Lac-Chr6:46959924 Lac9g2318 Lac-Chr9:42528886 2.70E-17 dispersed
Lac11g0681 Lac-Chr11:7060658 Lac6g2931 Lac-Chr6:46959924 3.30E-45 wgd
Lac12g0822 Lac-Chr12:8546830 Lac6g2931 Lac-Chr6:46959924 1.90E-17 wgd
Lac2g0610 Lac-Chr2:4591556 Lac6g2931 Lac-Chr6:46959924 5.40E-42 wgd
Lac3g0807 Lac-Chr3:6412484 Lac6g2931 Lac-Chr6:46959924 1.10E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24081 PF00847 AP2 3.20E-12 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2931 - - - 0.0