Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2951 ATGGCAGCCATAGCCCGAGACGAGTCCGACTACGACAGCAGTTGCTCCTCCATAACCGTCCCCGACTCCAGCCGCAGCTGGATGAGCAACCTCAGCTTCGGCAGCCGCCGCCGCAGCAGCTCAGCCGCAGACCCCGCCACCTCTCCTCCTCAGAAGCCCCACAAGGCCAACCAAGCTGCCTGGGAGGCCATGCGCTGGCTCCGGGGAGTGAAGGGAGGCCGTGTCGGCCTGGAGCACTTCCGCCTGCTGCGGCGGCTGGGCAGCGGCGACATTGGCAACGTCTACCTCTGCCAGATAAGGAACCCGATGGTGGGCCTGCCGCAGTGCTTCTACGCCATGAAAGTGGTCGACAGGGAAGCGCTTTCCGTCAGGAACAAGGTCCGGCGAGCCGACATGGAGAAGGAGATTCTGAAACTGCTCGATCATCCGTTCTTGCCCACGCTTTACGCCGAGTTTGAGGCTTCTCATTACTCTTGTTTGGTCATGGAGTTCTGTCCCGGCGGGGATTTGTACGCCGCCCGCCAACGCCTCCCCGGGAAACGATTCTCCATTTCTTCTGCTAAGTTTTATGCGGCGGAGATAATTTTAGCGTTAGAGTATTTGCACATGATGGGCATAGTTTACAGAGATTTGAAGCCGGAAAACGTGCTGGTTAGAGAAGACGGCCACATAATGCTGTCGGATTTCGATCTCTGCCTCAAATGCGACGTCGTTCCCAAGCTCATCCGCTGCCGGACCACCGCCTCCGACCACCTCAGAACCACCTACTCCACCTCCTCTACCACCTCCTGCGCCGCCGCCCCAATCCAGCCCGTCCTCTCCTGTTTCTCCGCCGCCCGCCGCAGAAGATCCACCACCGTCACCGTCACCACCATCACCGAACACGCCGCCGCCGCCGACCACGACCACGACGACGCCAGCGACGACGGCGAGTTCGACCCGGAGCCGGAACTGGTCGCGGAGCCGATTAACGCCCGGTCGAAATCGTTCGTCGGAACCCACGAGTACTTGGCGCCGGAGGTTATTTCCGGGCAGGGGCACGGCAGCGCCGTCGACTGGTGGACGCTGGGGATTTTCTTATACGAAATGCTGTACGGGAAAACCCCTTTTAAAGGGGAGAACAACGAGAAAACCCTAATCAACATTCTGAAGCAGCCATTGGCGTTTCCAAGAATTGGGTTTAGTAGCAGCAAAGAGTATGAAGAAATGGTGAAAGTTGAGGATCTGATTAGGAAGCTTTTGGTCAAGAATCCCAAAAAGAGAATTGGAAGCTTAAAGGGTTCGGTTGAAATCAAAAGACATGAGTTTTTCAAAGGGGTAAATTGGGCACTTATCCGCTCTGTCCGACCTCCCCAAATCCCTAATTCCGAGCATCGGCTTCACAACAACATTAACCGTTCGAAATACCCTTCTAATTACTTACCCAAATTGAGCAAGAAACAACGAGAGCAACCCTACCAAATCCCTCCTCACCATTTCGATTACTTCTAG 1491 55.94 MAAIARDESDYDSSCSSITVPDSSRSWMSNLSFGSRRRSSSAADPATSPPQKPHKANQAAWEAMRWLRGVKGGRVGLEHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALSVRNKVRRADMEKEILKLLDHPFLPTLYAEFEASHYSCLVMEFCPGGDLYAARQRLPGKRFSISSAKFYAAEIILALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLCLKCDVVPKLIRCRTTASDHLRTTYSTSSTTSCAAAPIQPVLSCFSAARRRRSTTVTVTTITEHAAAADHDHDDASDDGEFDPEPELVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGIFLYEMLYGKTPFKGENNEKTLINILKQPLAFPRIGFSSSKEYEEMVKVEDLIRKLLVKNPKKRIGSLKGSVEIKRHEFFKGVNWALIRSVRPPQIPNSEHRLHNNINRSKYPSNYLPKLSKKQREQPYQIPPHHFDYF 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47118528 47120815 + Lag0006920.1 Lac6g2951 612720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2951 496 SUPERFAMILY Protein kinase-like (PK-like) 70 459 IPR011009 -
Lac6g2951 496 ProSiteProfiles Protein kinase domain profile. 80 437 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g2951 496 CDD STKc_phototropin_like 79 454 - -
Lac6g2951 496 FunFam protein kinase PINOID 2 78 164 - -
Lac6g2951 496 Pfam Protein kinase domain 327 437 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g2951 496 Pfam Protein kinase domain 81 234 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g2951 496 FunFam serine/threonine-protein kinase D6PK-like 325 455 - -
Lac6g2951 496 MobiDBLite consensus disorder prediction 1 56 - -
Lac6g2951 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g2951 496 Gene3D Transferase(Phosphotransferase) domain 1 325 455 - -
Lac6g2951 496 SMART serkin_6 80 437 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g2951 496 Gene3D Transferase(Phosphotransferase) domain 1 165 234 - -
Lac6g2951 496 PANTHER FLIPPASE KINASE 1-RELATED 30 466 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lac6g2951 496 FunFam protein kinase PINOID 165 233 - -
Lac6g2951 496 Gene3D Phosphorylase Kinase; domain 1 78 164 - -
Lac6g2951 496 MobiDBLite consensus disorder prediction 10 54 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1141 Lac-Chr10:9560175 Lac6g2951 Lac-Chr6:47118528 3.90E-108 dispersed
Lac5g2356 Lac-Chr5:42230505 Lac6g2951 Lac-Chr6:47118528 4.00E-92 dispersed
Lac6g2951 Lac-Chr6:47118528 Lac8g0213 Lac-Chr8:2395477 4.00E-111 dispersed
Lac6g2951 Lac-Chr6:47118528 Lac1g3129 Lac-Chr1:51633641 8.70E-114 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86290 PF00069 Pkinase 1.10E-31 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2951 K08286 - csv:101202905 775.393