Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2958 ATGGTGGGTGGTAATTTTTCTTTCTTCGAGTGGCTTAGAGTTTCCATTCTCTGCTGTTTTCTGCTGCTGGTGGCGCTGCGCGCGGCGGTGGTGCTCTGGTGGCGGCCGAGAAAAATCGAACAGCATTTTTTCCGGCAGGGAATTAGAGGCCCTCCTTATCGTTTCTTCATCGGAAATGTTAAGGAACTTGTCGGAATGATGATTAAAGCTTCTTCTGATCATTCTTTTCCTCATTTTTCTCATAACATTCTTCCTCGTGTTCTCCCTTTTTATCATCACTGGAAGAAGATTTATGGTTCAAAATTTCTGGTGTGGTTCGGGCCGACAGTGAGACTGGCAGTATCTGATCCGGACCTCATTCGAGAAATCTTCACATCAAAATCAGAATTGTGTGAAAAAAACGAACCACACCCACTCGTTAAACAGCTCGAAGGCGATGGCCTCCTCAGCCTCAAAGGCCAAAAATGGGCACTTCATCGCAAGATCATCTCTCCTTCCTTCCACATGGACAATCTCAAATTGTTGATTCCAGTGATGGCAAAAAGTGTTGTGGATATGTTGGAAAAATGGTCAGCAATGTCAGCAGAATCCGGTGAGGTGGAAATTGAAGTTTCCGAATGGTTCCAAACCCTAACCGAAGATGTCATCACTAGGACAGCCTTTGGCTCTAGCTATGAAGATGGGAAAGCCATTTTCCGCTTACAAGCCCAACAAATGGTCCTTGCAGCTCAAGCCTTTGAAAAGGTTTTCATCCCGGGCTACCGATTCTTACCGACGAGGACGAACGTGAACTCGTGGAGATTGGATAAGGAGATAAGGAAGTCGTTGATGAAATTGATCGAGCGACGACGGGAGAATTCGATCGAGAGCTCGAAGGATTTGCTAGGGTTGATGATAAGGGCATCAAACTCTTGTCCATCATCAACTATCACTGTTAATGACATTGTTGAAGAGTGCAAGGGGTTTTTCTTTGCTGGCAAACAGACCACATCCAATTTGCTGACGTGGACAATGATCCTCATGGCAATGCACCCACAATGGCAGGTACAGGCACGTGACGAGGTACTGAGGGAGTGTGGAGCACGTGACATACCCTCCAAAGATGATGTTACAAAGCTCAAAACGTTGAGTATGATCGTCAATGAATCATTACGATTATATCCACCGACGGTGGCAACTATTCGACAAGCGAAAGCTGACGTGGAACTTGGCGGTTACATGATTCCACGTGGCACTGAGCTCTTGATCCCGATTTTGGCCGTTCACCATGATCAGAAGATATGGGGGAATGATGTGAATGAGTTCAATCCAGGACGATTTGCAGAAGGCGTGGCAAGGGCAGCCAATCATCGGGTTGGGTTCATACCGTTTGGGCTTGGAGCTCGAACCTGTATTGGGCAAAACTTGGCTATTTTGCAAGCCAAGTTGGCTCTTGCAATCATACTTCAAAGATTCTCTTTTCGATTGGGTCCCTCTTATCAGCACGCACCAGCGGTCCAGATGCTACTTTATCCACGATATGGTGCACCTATTATCTTCCAAAAATTATCCACTCCATTGATCCATCAAGATCAACGCTCGTGA 1584 46.21 MVGGNFSFFEWLRVSILCCFLLLVALRAAVVLWWRPRKIEQHFFRQGIRGPPYRFFIGNVKELVGMMIKASSDHSFPHFSHNILPRVLPFYHHWKKIYGSKFLVWFGPTVRLAVSDPDLIREIFTSKSELCEKNEPHPLVKQLEGDGLLSLKGQKWALHRKIISPSFHMDNLKLLIPVMAKSVVDMLEKWSAMSAESGEVEIEVSEWFQTLTEDVITRTAFGSSYEDGKAIFRLQAQQMVLAAQAFEKVFIPGYRFLPTRTNVNSWRLDKEIRKSLMKLIERRRENSIESSKDLLGLMIRASNSCPSSTITVNDIVEECKGFFFAGKQTTSNLLTWTMILMAMHPQWQVQARDEVLRECGARDIPSKDDVTKLKTLSMIVNESLRLYPPTVATIRQAKADVELGGYMIPRGTELLIPILAVHHDQKIWGNDVNEFNPGRFAEGVARAANHRVGFIPFGLGARTCIGQNLAILQAKLALAIILQRFSFRLGPSYQHAPAVQMLLYPRYGAPIIFQKLSTPLIHQDQRS 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47176422 47179401 - Lag0006927.1 Lac6g2958 612727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2958 527 CDD CYP734 88 510 - -
Lac6g2958 527 Gene3D Cytochrome P450 33 517 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2958 527 Pfam Cytochrome P450 91 492 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2958 527 FunFam Cytochrome P450 734A1 33 517 - -
Lac6g2958 527 PRINTS P450 superfamily signature 378 389 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2958 527 PRINTS P450 superfamily signature 464 475 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2958 527 PRINTS P450 superfamily signature 325 342 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2958 527 PRINTS P450 superfamily signature 455 464 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2958 527 PRINTS E-class P450 group I signature 314 331 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2958 527 PRINTS E-class P450 group I signature 334 360 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2958 527 PRINTS E-class P450 group I signature 211 229 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2958 527 PRINTS E-class P450 group I signature 464 487 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2958 527 PRINTS E-class P450 group I signature 454 464 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2958 527 PRINTS E-class P450 group I signature 95 114 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2958 527 SUPERFAMILY Cytochrome P450 48 514 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2958 527 PANTHER CYTOCHROME P450 FAMILY MEMBER 18 508 IPR050665 GO:0004497(PANTHER)|GO:0010268(PANTHER)|GO:0016131(PANTHER)
Lac6g2958 527 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 457 466 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1270 Lac-Chr13:11504353 Lac6g2958 Lac-Chr6:47176422 1.50E-79 dispersed
Lac3g1069 Lac-Chr3:8766346 Lac6g2958 Lac-Chr6:47176422 3.40E-113 dispersed
Lac3g2151 Lac-Chr3:26961459 Lac6g2958 Lac-Chr6:47176422 2.80E-82 dispersed
Lac6g2958 Lac-Chr6:47176422 Lac8g2821 Lac-Chr8:45447759 8.70E-96 dispersed
Lac13g0805 Lac-Chr13:6454870 Lac6g2958 Lac-Chr6:47176422 9.10E-14 transposed
Lac2g0465 Lac-Chr2:3402231 Lac6g2958 Lac-Chr6:47176422 8.60E-27 transposed
Lac3g0839 Lac-Chr3:6698421 Lac6g2958 Lac-Chr6:47176422 1.50E-231 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2958 K15639 - csv:101208789 939.488