Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2971 ATGGATTCTGCAATTTCTCTTTGCTCTGTTTTTCTTCTTCTTCTTTTGACTCAGTGGGTCGACTCGGAGCCCACTCAGGATAAACAAGCCCTTCTCGATTTCCTCTCTAAAGCTCCTCACGCCAATCGGGTTCAATGGAATTCCTCTACTTCCGTCTGTAATTGGGTCGGCGTTGAGTGCGATTCGAATCAGTCGTTTGTTTACTCTCTCCGTTTGCCCGGCGTTGGCCTCGTCGGTCCGATTCCGGCCAACACCATTGGGAAGTTGACTCAGCTCCGAGTTCTCAGTCTCCGTTCGAATCGACTCTCCGGCGAGATCCCCTCGGATTTTTCTAATTTGATAATGCTGCGGAATCTGTATCTTCAGGATAATGCCTTCTCCGGCGAGTTTCCGCCGAGTTTGACTCGGTTGAATCGGCTGACTCGGCTGGATTTGTCGTCGAATAACTTTTCCGGTCAGATTCCGCCGGCTGTTGACAATCTGACCCATTTGAGTGGGATTTTCTTGCAGAACAATGGGTTCTCCGGTTCAATCCCGAGCATCTCGGCAGTTAATTTGACGAACTTCAACGTCTCTAACAACAAACTCAACGGCTCGATTCCAAATTCGTTAGCGAAATTCCCCGCCTCCTCCTTCGCCGGAAATCTAGATCTCTGCGGCGGACCATTCCCCTCCTGCAACCCATCCACTCCCTCTCCAGCTCCGTCACAAAACCAACCGCCATCCGACACCGGCGGTGGAAAATCGAAGAAGCTCTCCACAGCCGCCATAATCGGGATCATCATCGGCGCCGTGTTCGCGGCGTTTCTCCTCCTCCTCATCCTCCTCCTCTGCATCCGCCGGCGGTCCCGCCACCAACCCGCGAAGCCACAGAAGGCATCGGCGGCAACAGCAACAGCGAGAGCGATTCCGGTGGCGGAGGCCGGGACGTCGTCGTCGAAAGACGACATAACCGGGGGGTCGGTGGAGGCGGCGGAGAGGAACAAGCTGGTGTTCTTCGAAGGAGGGATTTACAATTTCGATTTGGAGGATCTGTTGAGGGCGTCGGCGGAGGTGCTGGGGAAAGGGAGTGTCGGAACGTCGTACAAGGCGGTGCTGGAGGAAGGGACGACGGTGGTTGTGAAGCGGCTGAAGGATGTGGTGGTGACGAAGAAGGAATTCGAGACGCAAATGGAGGTTCTGGGCAAGATTAAACATGAAAATGTGGTTCCGCTTCGAGCTTTTTACTTCTCCAAAGATGAGAAATTGCTGGTTTATGATTACATTTCCACCGGAAGTTTGTCGGCCAGCCTTCACGGAAGCAGAGGCTCCGGCAGGACACCACTGGACTGGGACAGTAGAATGAGAATAGCAGTAAGCGCCGGCAGAGGACTGGCCCATCTCCACCTCGCCGGCAAGGTGGTTCACGGCAACATAAAATCCTCCAACATCCTTCTCCGGCCAGACCACGACGCCTGCATCTCCGACTTCGGCCTCAACCCACTCTTCGGCACCGCCACGCCGCCCAACCGCGTCGCCGGCTACCGAGCACCGGAGGTCGTCGAGACCCGAAAAGTAACCTTCAAATCCGACGTTTACAGCTACGGCGTTCTCCTCCTCGAGCTCTTGACCGGCAAAGCCCCCAACCAACAGTCCCTCGGCGAGGACGGCATCGACCTCCCCCGGTGGGTCCAGTCCGTCGTCCGGGAGGAATGGACGGCGGAGGTTTTCGACGCCGAACTGATGCGCTTCCACAACATCGAAGAAGAGATGGTTCAGCTGCTTCAAATCGCAATGTCTTGCGTCTCGACGGTCCCCGATCAGCGGCCGACGATGCCGGAAGTCGTACGGATGATCGAGGATATGAACAGAAGCGAGACCGACGAGGGGTTGCGCCAGTCCTCCGACGACCCGTCGAAAGGGTCCGACGTGAACACGCCGCCGGCGGAATCGAGAACTCCGCCGAGAGTGACGCCGTAG 1959 56.3 MDSAISLCSVFLLLLLTQWVDSEPTQDKQALLDFLSKAPHANRVQWNSSTSVCNWVGVECDSNQSFVYSLRLPGVGLVGPIPANTIGKLTQLRVLSLRSNRLSGEIPSDFSNLIMLRNLYLQDNAFSGEFPPSLTRLNRLTRLDLSSNNFSGQIPPAVDNLTHLSGIFLQNNGFSGSIPSISAVNLTNFNVSNNKLNGSIPNSLAKFPASSFAGNLDLCGGPFPSCNPSTPSPAPSQNQPPSDTGGGKSKKLSTAAIIGIIIGAVFAAFLLLLILLLCIRRRSRHQPAKPQKASAATATARAIPVAEAGTSSSKDDITGGSVEAAERNKLVFFEGGIYNFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKKEFETQMEVLGKIKHENVVPLRAFYFSKDEKLLVYDYISTGSLSASLHGSRGSGRTPLDWDSRMRIAVSAGRGLAHLHLAGKVVHGNIKSSNILLRPDHDACISDFGLNPLFGTATPPNRVAGYRAPEVVETRKVTFKSDVYSYGVLLLELLTGKAPNQQSLGEDGIDLPRWVQSVVREEWTAEVFDAELMRFHNIEEEMVQLLQIAMSCVSTVPDQRPTMPEVVRMIEDMNRSETDEGLRQSSDDPSKGSDVNTPPAESRTPPRVTP 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47280640 47285016 - Lag0006940.1 Lac6g2971 612740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2971 652 SUPERFAMILY Protein kinase-like (PK-like) 351 612 IPR011009 -
Lac6g2971 652 Gene3D Phosphorylase Kinase; domain 1 315 421 - -
Lac6g2971 652 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 422 626 - -
Lac6g2971 652 Gene3D Ribonuclease Inhibitor 24 183 IPR032675 -
Lac6g2971 652 Pfam Protein kinase domain 351 610 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g2971 652 Gene3D Transferase(Phosphotransferase) domain 1 422 636 - -
Lac6g2971 652 ProSiteProfiles Protein kinase domain profile. 347 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g2971 652 PANTHER OS05G0588300 PROTEIN 8 622 IPR050994 -
Lac6g2971 652 MobiDBLite consensus disorder prediction 630 644 - -
Lac6g2971 652 SUPERFAMILY L domain-like 46 209 - -
Lac6g2971 652 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
Lac6g2971 652 MobiDBLite consensus disorder prediction 614 652 - -
Lac6g2971 652 MobiDBLite consensus disorder prediction 614 629 - -
Lac6g2971 652 Gene3D Ribonuclease Inhibitor 184 230 IPR032675 -
Lac6g2971 652 MobiDBLite consensus disorder prediction 224 248 - -
Lac6g2971 652 FunFam Probable inactive receptor kinase RLK902 24 182 - -
Lac6g2971 652 CDD STKc_IRAK 353 615 - -
Lac6g2971 652 FunFam pollen receptor-like kinase 1 317 421 - -
Lac6g2971 652 Pfam Leucine Rich Repeat 139 161 IPR001611 GO:0005515(InterPro)
Lac6g2971 652 Pfam Leucine Rich Repeat 116 137 IPR001611 GO:0005515(InterPro)
Lac6g2971 652 Pfam Leucine Rich Repeat 185 206 IPR001611 GO:0005515(InterPro)
Lac6g2971 652 Pfam Leucine Rich Repeat 91 113 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2027 Lac-Chr11:35855030 Lac6g2971 Lac-Chr6:47280640 1.70E-135 dispersed
Lac13g1546 Lac-Chr13:16031946 Lac6g2971 Lac-Chr6:47280640 2.10E-83 dispersed
Lac5g2710 Lac-Chr5:45580266 Lac6g2971 Lac-Chr6:47280640 3.90E-66 dispersed
Lac6g2971 Lac-Chr6:47280640 Lac8g1972 Lac-Chr8:38157274 9.70E-97 dispersed
Lac10g2928 Lac-Chr10:43890450 Lac6g2971 Lac-Chr6:47280640 5.70E-92 transposed
Lac13g0520 Lac-Chr13:3812849 Lac6g2971 Lac-Chr6:47280640 5.80E-105 transposed
Lac13g1198 Lac-Chr13:10665925 Lac6g2971 Lac-Chr6:47280640 7.00E-71 transposed
Lac1g1766 Lac-Chr1:39168843 Lac6g2971 Lac-Chr6:47280640 3.80E-146 transposed
Lac9g2320 Lac-Chr9:42535624 Lac6g2971 Lac-Chr6:47280640 4.10E-145 transposed
Lac3g0862 Lac-Chr3:6916549 Lac6g2971 Lac-Chr6:47280640 1.10E-236 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86291 PF00069 Pkinase 2.00E-37 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2971 - - - 0.0