Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2988 ATGAAGAGCGATACCCATTTCAACATTCATCTTTCGTTTCTAATTTTCCTCTTCTTCGGCACTCTTCTGTGCCTCTCTTCAGCTCTCTCTGAAGAGTTTCTTCAAGTTTCCGGCCATGGCGGCGGCGGAGGCAGCGGCCTCACCGACGCCGAAGCTCACTACATCCGTCAACGCCAACTCCTTTACTACAGAGACGAATTTGGCGACCGTGGTGAAGAAGTCACCGTCGATCCCAAGCTAGTTTTTGAAAACGACAGAATCAGAAATGCTTACATCGCATTACAAGCTTGGAAGCAAGCGATCCTCTCTGACCCTTTGAATCTCACTCGCAATTGGGTTGGATCTGATGTTTGTAGCTACAAAGGGGTTTTCTGTGCTCCGGCGCCGGATAATTCCTCGGTCCGTACGGTCGCCGGAATCGACCTCAACCACGGCGACATTGCCGGATACTTGCCGGAGGAGCTCGGCCTTCTTGTGGATCTTGCATTGTTTCATATCAACTCCAATCGCTTCTGCGGCACTGTTCCTCAGAAGTTTAAGCACTTGAAGTTGCTGTTCGAGTTGGATCTGAGCAACAATCGCTTCGCCGGAAAGTTTCCTCGGGTGGTTCTCGAGCTGCCGCAGCTGAAGTTTTTGGATCTGAGATTCAACGAGTTTGAAGGGACTGTCCCTAAGGAGCTGTTCGACAAGGATTTGGACGCCATTTTCATCAACCACAACAGATTCCGGTTTGACTTGCCGGAAAATTTCGGAAACTCGCCGGTTTCGGTGATTGTTCTTGCTAATAATAAATTCCATGGCTGTGTTCCGGGGAGCATTGGGAATATGACGAGGTTGAATGAGATTATTCTGATGAATAATGGGTTCCGGTCGTGTTTGCCGTCGGAGATTGGGTTGCTGAAGAATCTGACAGTGTTTGATGTGAGTTTTAATGAGTTTTTTGGGTCTTTGCCGGAGACGATCGGCGGAATGGTGAGCTTAGAGCAGCTGAATGTGGCGCATAATTTCTTGTCGGGGAAGATTCCGGACAGTATTTGTAAGTTGCCGAATCTGCAGAACTTTACTTACTCGTATAATTTCTTTACTGGAGAAGCGCCGTCGTGCTTGGCGTTGCCGGCGTTTGATGACCGGAGGAACTGTCTACCGGAGCGGCCGGTGCAACGGTCGGAGAGGCAATGTAAGTCGTTCTTGTCTAAGCCTGTGGATTGCAGTTCTTTTGGATGTCCTTCTTATGTTGCTCCGTCGCCACCTGTGGTGGTGCCCTCTCCGCCACCTGTTGTTGTTCCATCTCCTCCGCCACCTGTTTCCTCTCCTCCGCCACCTGTTTCCGCTTCACACCCTATTTACCGACCACGCCCTCCTCCGCCACCATCTCCCTCTCCCCTCCACCGCCAGTTTACTCTCCCCCGCCACCTCCACCTTCCCCACCGCCGCCTTCTCCCCCACCCCCACCACCGCCTGTTTACTCTCCACCCCCACCTCCCCCATCTCCTCCGCCACCACCTTCCCCACCACCGCCCTCACCCCCACCGCCGCCCCCACCAGTTTACTCTCCACCCCACCTCCACCATCACCACCACCACCATCTCCCCCACCACCCTCACCCCCACCGCCAGTTTACTCTCCACCCCACCTCCGCCCTCTCCTCCGCCACCGTCTCCTCCTCCCCCATCGCCGCCGCCACCGGCGCCGGTGTATTGTGTCCGACCATCACCACCACCGCCACCACCAAACTCACCCCCACCTCCTCCATTGTTCTCTCCACCCCCACCTGTTTACTACTACAATTCACCGCCACCACCCAACTCTCCACCACCGCCACCAATGTACTCTCCTCCGCCACCACCCCACTCGCCGCCTCCTCCGCCGCATTCACCTCCACCTCCAATCTATCCTTACTTATCTCCACCACCTCCTCCGCCTGTCTATTCCCCACCTCCACCGGTCTATTCACCGCCCCCACCACCGCCGTGTATAGAGCCTCCCCCACCACCGCCGCCGCCATGTATAGAGTATCATGAACCCCACCACCACCATCACCATCACCACCGCCGCCCATCCAGTACCTTCCTCCGCCATCTCCTTCACCCCCACCACCACCGCCACCAACCCCAGTTTACCATTCACCTCCCCCACCAGTTTACTACTCTCCACCACCACCACCGTCACCATCACCGCCGCCACCGCCTGCATCCCCACCACCATCACCTGTATACGAAGGCCCATTGCCACCAATCTATGGAGTTTCGTACGCCTCTCCTCCACCACCACCCTTCTATTGATTCTTTTGAGAAATTTTCCTCCTCTAACCTTACCTCAACTCAACCACAGAAGAAGGAGAAATTTACAAAACCATGCCCCCTTTTATCTTCTTCAATGTACTAA 2385 54.76 MKSDTHFNIHLSFLIFLFFGTLLCLSSALSEEFLQVSGHGGGGGSGLTDAEAHYIRQRQLLYYRDEFGDRGEEVTVDPKLVFENDRIRNAYIALQAWKQAILSDPLNLTRNWVGSDVCSYKGVFCAPAPDNSSVRTVAGIDLNHGDIAGYLPEELGLLVDLALFHINSNRFCGTVPQKFKHLKLLFELDLSNNRFAGKFPRVVLELPQLKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFRFDLPENFGNSPVSVIVLANNKFHGCVPGSIGNMTRLNEIILMNNGFRSCLPSEIGLLKNLTVFDVSFNEFFGSLPETIGGMVSLEQLNVAHNFLSGKIPDSICKLPNLQNFTYSYNFFTGEAPSCLALPAFDDRRNCLPERPVQRSERQCKSFLSKPVDCSSFGCPSYVAPSPPVVVPSPPPVVVPSPPPPVSSPPPPVSASHPIYRPRPPPPPSPSPLHRQFTLPRHLHLPHRRLLPHPHHRLFTLHPHLPHLLRHHLPHHRPHPHRRPHQFTLHPTSTITTTTISPTTLTPTASLLSTPPPPSPPPPSPPPPSPPPPAPVYCVRPSPPPPPPNSPPPPPLFSPPPPVYYYNSPPPPNSPPPPPMYSPPPPPHSPPPPPHSPPPPIYPYLSPPPPPPVYSPPPPVYSPPPPPPCIEPPPPPPPPCIEYHEPHHHHHHHHRRPSSTFLRHLLHPHHHRHQPQFTIHLPHQFTTLHHHHRHHHRRHRLHPHHHHLYTKAHCHQSMEFRTPLLHHHPSIDSFEKFSSSNLTSTQPQKKEKFTKPCPLLSSSMY 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47471664 47474048 - Lag0006957.1 Lac6g2988 612757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2988 794 Gene3D Ribonuclease Inhibitor 91 251 IPR032675 -
Lac6g2988 794 FunFam Leucine-rich repeat extensin-like protein 5 253 392 - -
Lac6g2988 794 SUPERFAMILY L domain-like 91 372 - -
Lac6g2988 794 Gene3D Ribonuclease Inhibitor 252 394 IPR032675 -
Lac6g2988 794 MobiDBLite consensus disorder prediction 540 562 - -
Lac6g2988 794 MobiDBLite consensus disorder prediction 499 562 - -
Lac6g2988 794 MobiDBLite consensus disorder prediction 499 515 - -
Lac6g2988 794 MobiDBLite consensus disorder prediction 427 465 - -
Lac6g2988 794 Pfam Leucine rich repeat N-terminal domain 93 125 IPR013210 -
Lac6g2988 794 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 28 640 IPR051582 -
Lac6g2988 794 MobiDBLite consensus disorder prediction 669 688 - -
Lac6g2988 794 Pfam Leucine Rich Repeat 302 324 IPR001611 GO:0005515(InterPro)
Lac6g2988 794 Pfam Leucine Rich Repeat 326 348 IPR001611 GO:0005515(InterPro)
Lac6g2988 794 FunFam Leucine-rich repeat extensin-like protein 1 91 252 - -
Lac6g2988 794 MobiDBLite consensus disorder prediction 427 463 - -
Lac6g2988 794 Pfam Leucine rich repeat 163 218 IPR001611 GO:0005515(InterPro)
Lac6g2988 794 PRINTS Proline rich extensin signature 431 447 - -
Lac6g2988 794 PRINTS Proline rich extensin signature 540 565 - -
Lac6g2988 794 PRINTS Proline rich extensin signature 415 427 - -
Lac6g2988 794 PRINTS Proline rich extensin signature 519 536 - -
Lac6g2988 794 PRINTS Proline rich extensin signature 452 464 - -
Lac6g2988 794 MobiDBLite consensus disorder prediction 516 539 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0283 Lac-Chr12:3152159 Lac6g2988 Lac-Chr6:47471664 6.70E-13 dispersed
Lac4g0561 Lac-Chr4:12624701 Lac6g2988 Lac-Chr6:47471664 2.90E-40 dispersed
Lac6g2988 Lac-Chr6:47471664 Lac7g0710 Lac-Chr7:5721857 1.20E-19 dispersed
Lac3g0886 Lac-Chr3:7152776 Lac6g2988 Lac-Chr6:47471664 7.90E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2988 - - - 0.0