Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2998 ATGTCGATTTATCATCATCTATATCCAAAAAGAACGCCGCCGCCGTCCTCTACACCTCCACCAACTACCACTCCGTCGCCGCCGTCCGCCGCAACACCGCCCACCCCTTCTCAGCCTCCGCCAACCTCCGCCCCACCTCCAGCCACCCCGTCGTCTCCACCGCCGCCGTCTACTCCCCAGCCCGCCCCGCCCACTGCCTCTCCCTCACCGCCGGCTTCCTCTCCTCCGCCGTCTACGCCATCTACTCCCTCAACTTCTCCGCCTCCTCCGTCTTCTACCAGCCCTCCGTCTCCTCCGGCCCCAGCCGGCCGCAGTCCGCCTCCTCCGACTTCTCGCACGCCGTCCACTCCGTCAAGAAGTCCTCCGCCTCCGGCAACGTCGTCGTCGTCGCCGCCACCCTCGTCGTCGTCTAATATTTCAATTGGACTTGTCGTCGGAATCGCAATTGGTGGAGTGGTAATTGTTCTTCTGCTTAGTATATTGTGTCTTTGTTGCACGAAGAGGAGGAGAAGACGACGCGATGAAGAAGGATTTTATCCACACCCTCCGCCGGAACCAAAAGTTGACCCTTATGGTGGTCAGCAGCAATGGCAGCACAATGCTCCTCTGCCGCCCGATCCTGTGATCGGGATGGCGCCGAAGCCATCTCCTCCCCCGGCATTTGCGTCCCGACCCCCACACTCTCCGACTGGCGTTCGGCCTCCGCCTCCACAGCTCTATATGAGTAGCAGTGGAGGTTCAGGGTCTATGTATTCCGGGCCTGAAAATCCGCTCCCTCCGCCGCCTCCCCCTCCTATGGCTTTTGGTTTCTCAAAGAGTTCTTTTACTTATGAGGAATTGGCAATGGCGACCGATGGATTTTCGGATGCCAATCTCCTTGGACAGGGCGGATTCGGATACGTGCATAGAGGAGTTCTTCCTAATGGAAAGGAAGTTGCAGTCAAGCAGTTGAAAGCTGGAAGCGGGCAGGGCGAACGAGAATTTCAGGCCGAAGTCGATACGATCAGCCGAGTTCATCATAAACATCTTGTTTCTTTGGTTGGATATTGCTCAACTGGACCTCAAAGATTGCTTGTTTATGAGTTTGTTCCAAACAACACTTTGGAGTTCCATTTACATGGTAAAGGGCGACCGACCATGGATTGGCAGACGAGACTTAGAATCGCTTTAGGATCAGCAAAAGGATTAGCTTATCTTCATGAGGATTGTCACCCGAGAATCATTCATCGTGATATTAAAGCGGCTAACATACTGTTGGATTTCAAGTTTGAAGCGAAGGTTGCTGATTTTGGACTTGCAAAGTTTTCTTCTGATGCCAATACCCATGTATCGACTCGAGTGATGGGTACTTTCGGGTATCTTGCACCAGAGTATGCCTCAAGTGGCAAACTTACTGACAAATCAGATGTTTTCTCCTTTGGGGTTATGCTTTTGGAGTTGATCACCGGTCGTCGACCAGTCGATACGAGTAATACTTTCATGGAAGATAGTCTCGTAGACTGGGCTAGGCCGTTATTGAACCGAGCTGTAGAAGATGGAAACTTCGATGCTTTGGTCGATCCAAGGCTGCAGAACAACTACAACCACAATGAGATGGCTCGTATGATCGACTGCGCTGCAGCTTGTGTGCGACATTCTGCAAGGCGCCGACCACGAATGAGCCAGGTAGTACGAGCGCTCGAAGGAGACGCGTCACTATCGGATCTCAACGAAGGAGTCAGACCCGGGCAGAGCTCAATGTACAGCTCTCATGGAAGCTCAGACTACGACACCCAACAGTACAATGAGGACTTGAGGAAGTTCAGGAAGATGGCACTGGGAAGCACGGAGTATGGAGCGAGCAGCGAATACAGCGGACCGACGAGCGAGTACGGGCTGTACCCTTCGGGGTCGAGCAGTGAAGGGCAAACCACGAGAGAAATGGAGATGAGAACAGGGAAGAAAGATAGTCGAGGCTTCAGCGGAGGCTCTTGA 1974 53.44 MSIYHHLYPKRTPPPSSTPPPTTTPSPPSAATPPTPSQPPPTSAPPPATPSSPPPPSTPQPAPPTASPSPPASSPPPSTPSTPSTSPPPPSSTSPPSPPAPAGRSPPPPTSRTPSTPSRSPPPPATSSSSPPPSSSSNISIGLVVGIAIGGVVIVLLLSILCLCCTKRRRRRRDEEGFYPHPPPEPKVDPYGGQQQWQHNAPLPPDPVIGMAPKPSPPPAFASRPPHSPTGVRPPPPQLYMSSSGGSGSMYSGPENPLPPPPPPPMAFGFSKSSFTYEELAMATDGFSDANLLGQGGFGYVHRGVLPNGKEVAVKQLKAGSGQGEREFQAEVDTISRVHHKHLVSLVGYCSTGPQRLLVYEFVPNNTLEFHLHGKGRPTMDWQTRLRIALGSAKGLAYLHEDCHPRIIHRDIKAANILLDFKFEAKVADFGLAKFSSDANTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSFGVMLLELITGRRPVDTSNTFMEDSLVDWARPLLNRAVEDGNFDALVDPRLQNNYNHNEMARMIDCAAACVRHSARRRPRMSQVVRALEGDASLSDLNEGVRPGQSSMYSSHGSSDYDTQQYNEDLRKFRKMALGSTEYGASSEYSGPTSEYGLYPSGSSSEGQTTREMEMRTGKKDSRGFSGGS 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47585561 47589663 + Lag0006967.1 Lac6g2998 612767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2998 657 ProSitePatterns Protein kinases ATP-binding region signature. 293 315 IPR017441 GO:0005524(InterPro)
Lac6g2998 657 MobiDBLite consensus disorder prediction 567 591 - -
Lac6g2998 657 ProSiteProfiles Protein kinase domain profile. 287 566 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g2998 657 MobiDBLite consensus disorder prediction 1 137 - -
Lac6g2998 657 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 110 604 IPR047117 -
Lac6g2998 657 Gene3D Transferase(Phosphotransferase) domain 1 363 572 - -
Lac6g2998 657 FunFam Proline-rich receptor-like protein kinase PERK1 363 571 - -
Lac6g2998 657 FunFam proline-rich receptor-like protein kinase PERK1 265 362 - -
Lac6g2998 657 Gene3D Phosphorylase Kinase; domain 1 269 362 - -
Lac6g2998 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 407 419 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g2998 657 MobiDBLite consensus disorder prediction 611 639 - -
Lac6g2998 657 Pfam Protein tyrosine and serine/threonine kinase 292 560 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g2998 657 SUPERFAMILY Protein kinase-like (PK-like) 262 560 IPR011009 -
Lac6g2998 657 MobiDBLite consensus disorder prediction 12 130 - -
Lac6g2998 657 MobiDBLite consensus disorder prediction 206 236 - -
Lac6g2998 657 MobiDBLite consensus disorder prediction 175 262 - -
Lac6g2998 657 SMART serkin_6 287 560 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g2998 657 MobiDBLite consensus disorder prediction 610 657 - -
Lac6g2998 657 PRINTS Proline rich extensin signature 22 38 - -
Lac6g2998 657 PRINTS Proline rich extensin signature 7 19 - -
Lac6g2998 657 PRINTS Proline rich extensin signature 43 55 - -
Lac6g2998 657 PRINTS Proline rich extensin signature 59 80 - -
Lac6g2998 657 MobiDBLite consensus disorder prediction 571 591 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0245 Lac-Chr2:1855606 Lac6g2998 Lac-Chr6:47585561 3.10E-67 dispersed
Lac3g1006 Lac-Chr3:8195040 Lac6g2998 Lac-Chr6:47585561 3.00E-85 dispersed
Lac6g2998 Lac-Chr6:47585561 Lac9g1665 Lac-Chr9:36012322 3.80E-157 dispersed
Lac9g1826 Lac-Chr9:38071390 Lac6g2998 Lac-Chr6:47585561 1.60E-62 dispersed
Lac11g0648 Lac-Chr11:6615294 Lac6g2998 Lac-Chr6:47585561 1.10E-76 transposed
Lac13g0200 Lac-Chr13:1385928 Lac6g2998 Lac-Chr6:47585561 3.20E-131 transposed
Lac5g2874 Lac-Chr5:46972873 Lac6g2998 Lac-Chr6:47585561 9.30E-73 transposed
Lac8g2805 Lac-Chr8:45266396 Lac6g2998 Lac-Chr6:47585561 1.20E-130 transposed
Lac1g3423 Lac-Chr1:53708314 Lac6g2998 Lac-Chr6:47585561 1.50E-74 wgd
Lac12g0765 Lac-Chr12:8015924 Lac6g2998 Lac-Chr6:47585561 3.60E-73 wgd
Lac3g0903 Lac-Chr3:7322582 Lac6g2998 Lac-Chr6:47585561 2.60E-196 wgd
Lac4g2841 Lac-Chr4:47036274 Lac6g2998 Lac-Chr6:47585561 5.50E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86292 PF07714 PK_Tyr_Ser-Thr 2.40E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2998 - - - 0.0