Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g3005 ATGGGGGAAGAAGATTCCGCTGGTGCGCCTCAGAAGAAGGCTCAATCGGATGGTGCAGCGTTGAGTAATTCTTCGTCATCGGATATTCCGTCTAAGAAGCTCGCTAGGCAGCTTGATTTCACCGGCTATGGAGGCGCCTCGCATCCTCAATCTCATTCGAACTCGCATTCACAGTCACAGGCTCCATTAGTTGCTCAGAATCTTCCGCAAGCTCAGCCGAAGCCGCAGCCGCAGATGGTGGTGGCGTCGATCGCACCTTTGGCGCCTCATTCGTCAGTAAGAGCTGTGAAACCAGAATCACCAATGTCAAGAGCAAGACCTGCTGTTGAAGCTAAAGATAGTACTCCTAAGAAGCAAAAACAGTGTAACTGTAAACATTCACGGTGTCTAAAATTGTATTGTGAATGCTTTGCTTCTGGAATATACTGTGATGGCTGCAACTGCATAAATTGTTATAACAATGTTGAAAATGATGCTGCCAGAAGAGAAGCAGTGGAAGCTACATTAGAGCGTAATCCAAATGCATTTCGACCAAAAATTGCTAGCAGTCCTCATGGAATGCGGGACAACAGGGAGGAGGCGGGGGAGTTGCTGATGTTGGGTAAGCACAACAAGGGATGCCACTGCAAGAAATCTGGTTGTCTAAAAAAATATTGCGAGTGTTTCCAGGCCAACATTCTCTGCTCAGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAAGCTCTTTTCCATGGAGACCATGGTAACAATATGGCATTCATTCAACAGGCAGCTAATGCTGCCATAACTGGGGCCATTGGCTCCTCTGGCTATGCTTCACCTCCTGTATCCAAGAAAAGAAAAGGTCAAGAACTCTACTTTGGACCGACAGCCAAGGACCTATCCACTCATAGACCAGTGCCATTTCAACAGGCAAATCATATCAGAGCCCCTGCTCCTCCGCTACCGTCCTTCCCCATTGCTGGTGTTGGAAGCCCATCATTGTTGGGTCCTTCAAAGTTTACATATAGGTCTTTGATGGCAGACATCATTCAATCACAAGATTTGAAGGATCTTTGCTCTGTTTTGGTTGTTCTGTCAAGTGAAGCTGCCAAGACATTTCAAGACCAAACAAATGCAACAGAAAAGCAAGCTGATTGTCAGACAGAAACTTCTGTTGCATCATCCACTCAAGATAGGTTACAGAAAACAGATGCATCTGATGAGAAAGCTGCAGCCGATGATCGTTCAAGTGCAAACCAGACCGATAAAACCACCCCCGATGATTCCAATTCAGATGGTGGAGATGTGCCAAAGGGCGCGCCCATGTCTCCCGGAACCTTAGCTTTGATGTGTGATGAGCAAGATACAATACTAATGGCTGCTGCTTCCCCCAACAGATTAACGGGTCCTGGCTGCAGCACATCTTCACAACTGCCCCACAGACAAGACATGTCAGAGGTCTATGCAGAGCAGGAGAGGATCGTCCTAACGAAGTTTCGGGATTGTCTTAATAGACTCATCACTTTGGGAGAAATAAAAGAGACACAGTGTTCATCTTTAGCTAGAAGTGAAGTAGGTAACCAAGAACACCAACTCAACAATGGCACTACAAATTCTAGAACTGAAACTCAAACTCATTTGGGCCAACTCAACAATAAAGTTACGAAATCTTCGATACCACCGTCAGTGAAGACATCTCCTACGGTAACTGCAGCAGTCATGACCCTTAGCAACGATCAACGACAGAAAGTTTTGCCTCTGTCTTGA 1770 45.93 MGEEDSAGAPQKKAQSDGAALSNSSSSDIPSKKLARQLDFTGYGGASHPQSHSNSHSQSQAPLVAQNLPQAQPKPQPQMVVASIAPLAPHSSVRAVKPESPMSRARPAVEAKDSTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENDAARREAVEATLERNPNAFRPKIASSPHGMRDNREEAGELLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGNNMAFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGPTAKDLSTHRPVPFQQANHIRAPAPPLPSFPIAGVGSPSLLGPSKFTYRSLMADIIQSQDLKDLCSVLVVLSSEAAKTFQDQTNATEKQADCQTETSVASSTQDRLQKTDASDEKAAADDRSSANQTDKTTPDDSNSDGGDVPKGAPMSPGTLALMCDEQDTILMAAASPNRLTGPGCSTSSQLPHRQDMSEVYAEQERIVLTKFRDCLNRLITLGEIKETQCSSLARSEVGNQEHQLNNGTTNSRTETQTHLGQLNNKVTKSSIPPSVKTSPTVTAAVMTLSNDQRQKVLPLS 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47635815 47639848 - Lag0006974.1 Lac6g3005 612774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g3005 589 MobiDBLite consensus disorder prediction 375 448 - -
Lac6g3005 589 MobiDBLite consensus disorder prediction 375 401 - -
Lac6g3005 589 MobiDBLite consensus disorder prediction 44 77 - -
Lac6g3005 589 MobiDBLite consensus disorder prediction 92 119 - -
Lac6g3005 589 PANTHER TESMIN/TSO1-RELATED 31 518 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Lac6g3005 589 MobiDBLite consensus disorder prediction 402 417 - -
Lac6g3005 589 SMART CXC_2 117 157 IPR033467 -
Lac6g3005 589 SMART CXC_2 202 243 IPR033467 -
Lac6g3005 589 ProSiteProfiles CRC domain profile. 118 242 IPR005172 -
Lac6g3005 589 MobiDBLite consensus disorder prediction 16 32 - -
Lac6g3005 589 MobiDBLite consensus disorder prediction 418 432 - -
Lac6g3005 589 MobiDBLite consensus disorder prediction 1 78 - -
Lac6g3005 589 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 119 154 IPR005172 -
Lac6g3005 589 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 205 239 IPR005172 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0665 Lac-Chr6:5634333 Lac6g3005 Lac-Chr6:47635815 2.20E-29 dispersed
Lac6g3005 Lac-Chr6:47635815 Lac7g0713 Lac-Chr7:5749726 1.20E-29 dispersed
Lac3g0915 Lac-Chr3:7391604 Lac6g3005 Lac-Chr6:47635815 2.60E-181 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24088 PF03638 TCR 3.10E-12 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g3005 - - - 0.0