Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g3005 ATGGGGGAAGAAGATTCCGCTGGTGCGCCTCAGAAGAAGGCTCAATCGGATGGTGCAGCGTTGAGTAATTCTTCGTCATCGGATATTCCGTCTAAGAAGCTCGCTAGGCAGCTTGATTTCACCGGCTATGGAGGCGCCTCGCATCCTCAATCTCATTCGAACTCGCATTCACAGTCACAGGCTCCATTAGTTGCTCAGAATCTTCCGCAAGCTCAGCCGAAGCCGCAGCCGCAGATGGTGGTGGCGTCGATCGCACCTTTGGCGCCTCATTCGTCAGTAAGAGCTGTGAAACCAGAATCACCAATGTCAAGAGCAAGACCTGCTGTTGAAGCTAAAGATAGTACTCCTAAGAAGCAAAAACAGTGTAACTGTAAACATTCACGGTGTCTAAAATTGTATTGTGAATGCTTTGCTTCTGGAATATACTGTGATGGCTGCAACTGCATAAATTGTTATAACAATGTTGAAAATGATGCTGCCAGAAGAGAAGCAGTGGAAGCTACATTAGAGCGTAATCCAAATGCATTTCGACCAAAAATTGCTAGCAGTCCTCATGGAATGCGGGACAACAGGGAGGAGGCGGGGGAGTTGCTGATGTTGGGTAAGCACAACAAGGGATGCCACTGCAAGAAATCTGGTTGTCTAAAAAAATATTGCGAGTGTTTCCAGGCCAACATTCTCTGCTCAGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAAGCTCTTTTCCATGGAGACCATGGTAACAATATGGCATTCATTCAACAGGCAGCTAATGCTGCCATAACTGGGGCCATTGGCTCCTCTGGCTATGCTTCACCTCCTGTATCCAAGAAAAGAAAAGGTCAAGAACTCTACTTTGGACCGACAGCCAAGGACCTATCCACTCATAGACCAGTGCCATTTCAACAGGCAAATCATATCAGAGCCCCTGCTCCTCCGCTACCGTCCTTCCCCATTGCTGGTGTTGGAAGCCCATCATTGTTGGGTCCTTCAAAGTTTACATATAGGTCTTTGATGGCAGACATCATTCAATCACAAGATTTGAAGGATCTTTGCTCTGTTTTGGTTGTTCTGTCAAGTGAAGCTGCCAAGACATTTCAAGACCAAACAAATGCAACAGAAAAGCAAGCTGATTGTCAGACAGAAACTTCTGTTGCATCATCCACTCAAGATAGGTTACAGAAAACAGATGCATCTGATGAGAAAGCTGCAGCCGATGATCGTTCAAGTGCAAACCAGACCGATAAAACCACCCCCGATGATTCCAATTCAGATGGTGGAGATGTGCCAAAGGGCGCGCCCATGTCTCCCGGAACCTTAGCTTTGATGTGTGATGAGCAAGATACAATACTAATGGCTGCTGCTTCCCCCAACAGATTAACGGGTCCTGGCTGCAGCACATCTTCACAACTGCCCCACAGACAAGACATGTCAGAGGTCTATGCAGAGCAGGAGAGGATCGTCCTAACGAAGTTTCGGGATTGTCTTAATAGACTCATCACTTTGGGAGAAATAAAAGAGACACAGTGTTCATCTTTAGCTAGAAGTGAAGTAGGTAACCAAGAACACCAACTCAACAATGGCACTACAAATTCTAGAACTGAAACTCAAACTCATTTGGGCCAACTCAACAATAAAGTTACGAAATCTTCGATACCACCGTCAGTGAAGACATCTCCTACGGTAACTGCAGCAGTCATGACCCTTAGCAACGATCAACGACAGAAAGTTTTGCCTCTGTCTTGA 1770 45.93 MGEEDSAGAPQKKAQSDGAALSNSSSSDIPSKKLARQLDFTGYGGASHPQSHSNSHSQSQAPLVAQNLPQAQPKPQPQMVVASIAPLAPHSSVRAVKPESPMSRARPAVEAKDSTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENDAARREAVEATLERNPNAFRPKIASSPHGMRDNREEAGELLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGNNMAFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGPTAKDLSTHRPVPFQQANHIRAPAPPLPSFPIAGVGSPSLLGPSKFTYRSLMADIIQSQDLKDLCSVLVVLSSEAAKTFQDQTNATEKQADCQTETSVASSTQDRLQKTDASDEKAAADDRSSANQTDKTTPDDSNSDGGDVPKGAPMSPGTLALMCDEQDTILMAAASPNRLTGPGCSTSSQLPHRQDMSEVYAEQERIVLTKFRDCLNRLITLGEIKETQCSSLARSEVGNQEHQLNNGTTNSRTETQTHLGQLNNKVTKSSIPPSVKTSPTVTAAVMTLSNDQRQKVLPLS 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47635815 47639848 - Lag0006974.1 Lac6g3005 612774

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g3005 589 MobiDBLite consensus disorder prediction 375 448 - -
Lac6g3005 589 MobiDBLite consensus disorder prediction 375 401 - -
Lac6g3005 589 MobiDBLite consensus disorder prediction 44 77 - -
Lac6g3005 589 MobiDBLite consensus disorder prediction 92 119 - -
Lac6g3005 589 PANTHER TESMIN/TSO1-RELATED 31 518 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Lac6g3005 589 MobiDBLite consensus disorder prediction 402 417 - -
Lac6g3005 589 SMART CXC_2 117 157 IPR033467 -
Lac6g3005 589 SMART CXC_2 202 243 IPR033467 -
Lac6g3005 589 ProSiteProfiles CRC domain profile. 118 242 IPR005172 -
Lac6g3005 589 MobiDBLite consensus disorder prediction 16 32 - -
Lac6g3005 589 MobiDBLite consensus disorder prediction 418 432 - -
Lac6g3005 589 MobiDBLite consensus disorder prediction 1 78 - -
Lac6g3005 589 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 119 154 IPR005172 -
Lac6g3005 589 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 205 239 IPR005172 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g3005 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0665 Lac-Chr6:5634333 Lac6g3005 Lac-Chr6:47635815 2.20E-29 dispersed
Lac6g3005 Lac-Chr6:47635815 Lac7g0713 Lac-Chr7:5749726 1.20E-29 dispersed
Lac3g0915 Lac-Chr3:7391604 Lac6g3005 Lac-Chr6:47635815 2.60E-181 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g0665 . 282 417 CPP Transcription Factor Family AT3G22760 51.7 2.8e-40 164.1
Lac6g0665 . 280 417 CPP Transcription Factor Family AT3G22780 53.1 3.1e-40 164.5
Lac6g0665 . 278 417 CPP Transcription Factor Family AT4G14770 50.3 2.2e-40 164.9
Lac6g3005 . 90 519 CPP Transcription Factor Family AT2G20110 61.6 3.5e-140 496.1
Lac3g0915 . 16 539 CPP Transcription Factor Family AT2G20110 50.5 3.7e-126 449.5
Lac6g3005 . 29 526 CPP Transcription Factor Family AT4G29000 57.7 2.3e-153 540.0
Lac3g0915 . 25 538 CPP Transcription Factor Family AT4G29000 52.9 2.8e-143 506.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24088 PF03638 TCR 3.10E-12 No_clan Lac TF