Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g3016 ATGGCCGACGCCACCGTGCCGGAGACCGACTCGGGTGGCGCCAATTCCTCGTCGTCGCCGTCGTCTTCCTCTTCTTCCTCGACCCTCTCGCCTTCACGTTCCATCTCGTCTCTACCAAAACAAGGCGGCGCCAGAGTGAAACGCGGGCGCGAAATTAGTTGCAACAGCAACAGCAACAATAACAACAGTCGTCACCCAATTTACCGCGGCGTCCGAATGAGGGCGTGGGGCAAATGGGTGTCGGAAATTCGAGAGCCGAAGAAGAAGAGCCGGATCTGGCTCGGCACGTTCGCCACGCCCGACATGGCGGCGCGTGCTCACGATGTCGCCGCTCTCACCATCAAAGGTAACTCGGCCATCCTCAATTTCCCCGAACTCGCCGCCTCATTCCCTCGCCCCGCCTCCTCCTCCCCTCGCGACGTCCAATCCGCCGCCGCCCTAGCCGCCTCAATGCAACTCCCCAACGTCCCTCCTCCGCCACCACCACCGGCGCCGCAGTCATCGCCGCCGTCGCCGCCGTTCTCGTCTTCGTCCGAGTTAGACGAATCGACGCCGGAGGAACTGAGTGAGATCGTGGAGCTGCCGAGTTTGGGGACGAGTTACGCGGAATCGACCGAGTCGGTGACCGAGTTTGTGTGTGACGAGTGGCTGTATAGTTATGGGCCATGGTATCAAAATCAAAGCACAAAAGAAGAAGAAGAAGAAGCTTATGAGTACTTTAGAGAACAAATGGGAATGGCGGAAACAGAGTGTGTGATTCCTGCTGCATTATTTCAACCTTTCTCGTGGTAA 792 58.08 MADATVPETDSGGANSSSSPSSSSSSSTLSPSRSISSLPKQGGARVKRGREISCNSNSNNNNSRHPIYRGVRMRAWGKWVSEIREPKKKSRIWLGTFATPDMAARAHDVAALTIKGNSAILNFPELAASFPRPASSSPRDVQSAAALAASMQLPNVPPPPPPPAPQSSPPSPPFSSSSELDESTPEELSEIVELPSLGTSYAESTESVTEFVCDEWLYSYGPWYQNQSTKEEEEEAYEYFREQMGMAETECVIPAALFQPFSW 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47767594 47768385 - Lag0006985.1 Lac6g3016 612785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g3016 263 MobiDBLite consensus disorder prediction 152 188 - -
Lac6g3016 263 MobiDBLite consensus disorder prediction 9 39 - -
Lac6g3016 263 SUPERFAMILY DNA-binding domain 67 125 IPR016177 GO:0003677(InterPro)
Lac6g3016 263 MobiDBLite consensus disorder prediction 1 66 - -
Lac6g3016 263 MobiDBLite consensus disorder prediction 153 172 - -
Lac6g3016 263 Pfam AP2 domain 67 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g3016 263 CDD AP2 66 126 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g3016 263 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g3016 263 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g3016 263 SMART rav1_2 67 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g3016 263 ProSiteProfiles AP2/ERF domain profile. 67 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g3016 263 MobiDBLite consensus disorder prediction 51 66 - -
Lac6g3016 263 Gene3D AP2/ERF domain 67 125 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g3016 263 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 33 211 IPR051032 -
Lac6g3016 263 FunFam Ethylene-responsive transcription factor 2 66 125 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0905 Lac-Chr2:7108333 Lac6g3016 Lac-Chr6:47767594 4.30E-20 dispersed
Lac5g0379 Lac-Chr5:3982460 Lac6g3016 Lac-Chr6:47767594 5.30E-34 dispersed
Lac5g2895 Lac-Chr5:47149366 Lac6g3016 Lac-Chr6:47767594 1.20E-23 dispersed
Lac6g1292 Lac-Chr6:12963221 Lac6g3016 Lac-Chr6:47767594 6.10E-34 dispersed
Lac6g3016 Lac-Chr6:47767594 Lac7g0080 Lac-Chr7:698132 1.90E-27 dispersed
Lac12g0745 Lac-Chr12:7794324 Lac6g3016 Lac-Chr6:47767594 1.60E-13 wgd
Lac3g0945 Lac-Chr3:7626221 Lac6g3016 Lac-Chr6:47767594 6.40E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24089 PF00847 AP2 1.40E-12 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g3016 K09286 - csv:101212945 313.923