Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g3038 ATGAAGACCAAGACGCCATTGAAGCAGCTCAAGCTATCTGTTCCTGTTCAAGAAACTAATATCCATTCTTTCCTGACTGCGAGTGGAACATTTCACGACGGCAATCTGCTATTGAACCAGAAAGGATTGAGGCTTGTATCTGAAGAGAAAGAAACGCAGACTTCAGATGGTAAGGAGCTTGATGTCGATTTCTCATTGGAAGATCTAGAGACTGTGAAAGTCATCGGGAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGACACAAATGGGTTGGCAAACTTTTTGCCTTAAAGGTCATCCAGATGAACATACAAGAGGATATCCGTAAACAGATAGTGCAGGAGCTGAAAATAAATCAAGCAGCACAATGTCCACATATTGTGGTCTGCTATCACTCTTTCTACCACAATGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGTGGTTCTTTAGCTGATGTTGTCAGACAAGTCAAAACAATTCTTGAACCATATCTGGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTAGTTTACTTGCATCATGAGAGACATGTTATACACAGAGACATCAAGCCCTCCAATCTACTTGTGAACCATAAAGGGGAAGTCAAAATCACTGATTTTGGAGTAAGTGCAATGCTAGCAAGTTCTATGGGTCAGAGAGATACATTTGTAGGGACTTACAATTACATGTCGCCTGAGAGAATCAGCGGGGGAACTTATGACTACAGCAGTGACATATGGAGCTTGGGCCTGGTAGTACTTGAATGTGCCATTGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTTTTAGAGGCCATTGTAGCAAAGCCACCGCCTTCTGCTCCACCGGATCAATTTTCCCCTGAGTTCTGTTCATTCGTATCTGCTTGCATTAAGAAGGACCCTAAAGAAAGATCATCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGACAAAGACATCGATCTCGGGATTCTCGTAGGCAGCTTGGATCCTCCTGTAAGTTTTCCTAGATAA 1065 42.07 MKTKTPLKQLKLSVPVQETNIHSFLTASGTFHDGNLLLNQKGLRLVSEEKETQTSDGKELDVDFSLEDLETVKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRQVKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSSSLDLLNHPFIKKFEDKDIDLGILVGSLDPPVSFPR 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47962295 47965235 - Lag0007007.1 Lac6g3038 612807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g3038 354 SMART serkin_6 69 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g3038 354 Gene3D Phosphorylase Kinase; domain 1 38 148 - -
Lac6g3038 354 FunFam Mitogen-activated protein kinase kinase 6 39 148 - -
Lac6g3038 354 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g3038 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g3038 354 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524(InterPro)
Lac6g3038 354 Gene3D Transferase(Phosphotransferase) domain 1 150 343 - -
Lac6g3038 354 SUPERFAMILY Protein kinase-like (PK-like) 67 339 IPR011009 -
Lac6g3038 354 FunFam Mitogen-activated protein kinase kinase 6 150 348 - -
Lac6g3038 354 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 45 341 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Lac6g3038 354 CDD PKc_MAPKK_plant_like 67 333 - -
Lac6g3038 354 Pfam Protein kinase domain 70 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2499 Lac-Chr12:41993338 Lac6g3038 Lac-Chr6:47962295 5.30E-55 dispersed
Lac6g3038 Lac-Chr6:47962295 Lac8g0237 Lac-Chr8:2622693 1.20E-64 dispersed
Lac6g3038 Lac-Chr6:47962295 Lac6g3082 Lac-Chr6:48366392 1.90E-118 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86295 PF00069 Pkinase 2.20E-66 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g3038 K04368 - csv:101218848 681.404