Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac6g3038 | ATGAAGACCAAGACGCCATTGAAGCAGCTCAAGCTATCTGTTCCTGTTCAAGAAACTAATATCCATTCTTTCCTGACTGCGAGTGGAACATTTCACGACGGCAATCTGCTATTGAACCAGAAAGGATTGAGGCTTGTATCTGAAGAGAAAGAAACGCAGACTTCAGATGGTAAGGAGCTTGATGTCGATTTCTCATTGGAAGATCTAGAGACTGTGAAAGTCATCGGGAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGACACAAATGGGTTGGCAAACTTTTTGCCTTAAAGGTCATCCAGATGAACATACAAGAGGATATCCGTAAACAGATAGTGCAGGAGCTGAAAATAAATCAAGCAGCACAATGTCCACATATTGTGGTCTGCTATCACTCTTTCTACCACAATGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGTGGTTCTTTAGCTGATGTTGTCAGACAAGTCAAAACAATTCTTGAACCATATCTGGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTAGTTTACTTGCATCATGAGAGACATGTTATACACAGAGACATCAAGCCCTCCAATCTACTTGTGAACCATAAAGGGGAAGTCAAAATCACTGATTTTGGAGTAAGTGCAATGCTAGCAAGTTCTATGGGTCAGAGAGATACATTTGTAGGGACTTACAATTACATGTCGCCTGAGAGAATCAGCGGGGGAACTTATGACTACAGCAGTGACATATGGAGCTTGGGCCTGGTAGTACTTGAATGTGCCATTGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTTTTAGAGGCCATTGTAGCAAAGCCACCGCCTTCTGCTCCACCGGATCAATTTTCCCCTGAGTTCTGTTCATTCGTATCTGCTTGCATTAAGAAGGACCCTAAAGAAAGATCATCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGACAAAGACATCGATCTCGGGATTCTCGTAGGCAGCTTGGATCCTCCTGTAAGTTTTCCTAGATAA | 1065 | 42.07 | MKTKTPLKQLKLSVPVQETNIHSFLTASGTFHDGNLLLNQKGLRLVSEEKETQTSDGKELDVDFSLEDLETVKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRQVKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSSSLDLLNHPFIKKFEDKDIDLGILVGSLDPPVSFPR | 354 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 47962295 | 47965235 | - | Lag0007007.1 | Lac6g3038 | 612807 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac6g3038 | 354 | SMART | serkin_6 | 69 | 329 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac6g3038 | 354 | Gene3D | Phosphorylase Kinase; domain 1 | 38 | 148 | - | - | |
Lac6g3038 | 354 | FunFam | Mitogen-activated protein kinase kinase 6 | 39 | 148 | - | - | |
Lac6g3038 | 354 | ProSiteProfiles | Protein kinase domain profile. | 69 | 329 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac6g3038 | 354 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 187 | 199 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac6g3038 | 354 | ProSitePatterns | Protein kinases ATP-binding region signature. | 75 | 98 | IPR017441 | GO:0005524(InterPro) | |
Lac6g3038 | 354 | Gene3D | Transferase(Phosphotransferase) domain 1 | 150 | 343 | - | - | |
Lac6g3038 | 354 | SUPERFAMILY | Protein kinase-like (PK-like) | 67 | 339 | IPR011009 | - | |
Lac6g3038 | 354 | FunFam | Mitogen-activated protein kinase kinase 6 | 150 | 348 | - | - | |
Lac6g3038 | 354 | PANTHER | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED | 45 | 341 | - | GO:0000165(PANTHER)|GO:0004708(PANTHER) | |
Lac6g3038 | 354 | CDD | PKc_MAPKK_plant_like | 67 | 333 | - | - | |
Lac6g3038 | 354 | Pfam | Protein kinase domain | 70 | 329 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac12g2499 | Lac-Chr12:41993338 | Lac6g3038 | Lac-Chr6:47962295 | 5.30E-55 | dispersed | |
Lac6g3038 | Lac-Chr6:47962295 | Lac8g0237 | Lac-Chr8:2622693 | 1.20E-64 | dispersed | |
Lac6g3038 | Lac-Chr6:47962295 | Lac6g3082 | Lac-Chr6:48366392 | 1.90E-118 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86295 | PF00069 | Pkinase | 2.20E-66 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac6g3038 | K04368 | - | csv:101218848 | 681.404 |