Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g3038 ATGAAGACCAAGACGCCATTGAAGCAGCTCAAGCTATCTGTTCCTGTTCAAGAAACTAATATCCATTCTTTCCTGACTGCGAGTGGAACATTTCACGACGGCAATCTGCTATTGAACCAGAAAGGATTGAGGCTTGTATCTGAAGAGAAAGAAACGCAGACTTCAGATGGTAAGGAGCTTGATGTCGATTTCTCATTGGAAGATCTAGAGACTGTGAAAGTCATCGGGAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGACACAAATGGGTTGGCAAACTTTTTGCCTTAAAGGTCATCCAGATGAACATACAAGAGGATATCCGTAAACAGATAGTGCAGGAGCTGAAAATAAATCAAGCAGCACAATGTCCACATATTGTGGTCTGCTATCACTCTTTCTACCACAATGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGTGGTTCTTTAGCTGATGTTGTCAGACAAGTCAAAACAATTCTTGAACCATATCTGGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTAGTTTACTTGCATCATGAGAGACATGTTATACACAGAGACATCAAGCCCTCCAATCTACTTGTGAACCATAAAGGGGAAGTCAAAATCACTGATTTTGGAGTAAGTGCAATGCTAGCAAGTTCTATGGGTCAGAGAGATACATTTGTAGGGACTTACAATTACATGTCGCCTGAGAGAATCAGCGGGGGAACTTATGACTACAGCAGTGACATATGGAGCTTGGGCCTGGTAGTACTTGAATGTGCCATTGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTTTTAGAGGCCATTGTAGCAAAGCCACCGCCTTCTGCTCCACCGGATCAATTTTCCCCTGAGTTCTGTTCATTCGTATCTGCTTGCATTAAGAAGGACCCTAAAGAAAGATCATCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGACAAAGACATCGATCTCGGGATTCTCGTAGGCAGCTTGGATCCTCCTGTAAGTTTTCCTAGATAA 1065 42.07 MKTKTPLKQLKLSVPVQETNIHSFLTASGTFHDGNLLLNQKGLRLVSEEKETQTSDGKELDVDFSLEDLETVKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRQVKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSSSLDLLNHPFIKKFEDKDIDLGILVGSLDPPVSFPR 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47962295 47965235 - Lag0007007.1 Lac6g3038 612807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g3038 354 SMART serkin_6 69 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g3038 354 Gene3D Phosphorylase Kinase; domain 1 38 148 - -
Lac6g3038 354 FunFam Mitogen-activated protein kinase kinase 6 39 148 - -
Lac6g3038 354 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g3038 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g3038 354 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524(InterPro)
Lac6g3038 354 Gene3D Transferase(Phosphotransferase) domain 1 150 343 - -
Lac6g3038 354 SUPERFAMILY Protein kinase-like (PK-like) 67 339 IPR011009 -
Lac6g3038 354 FunFam Mitogen-activated protein kinase kinase 6 150 348 - -
Lac6g3038 354 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 45 341 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Lac6g3038 354 CDD PKc_MAPKK_plant_like 67 333 - -
Lac6g3038 354 Pfam Protein kinase domain 70 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g3038 K04368 - - csv:101218848 681.404
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2499 Lac-Chr12:41993338 Lac6g3038 Lac-Chr6:47962295 5.30E-55 dispersed
Lac6g3038 Lac-Chr6:47962295 Lac8g0237 Lac-Chr8:2622693 1.20E-64 dispersed
Lac6g3038 Lac-Chr6:47962295 Lac6g3082 Lac-Chr6:48366392 1.90E-118 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac3g1054 . 160 470 MAP Kinase Kinase Gene Family AT4G26070 68.1 3.3e-128 455.7
Lac6g3082 . 27 351 MAP Kinase Kinase Gene Family AT4G26070 67.5 8.0e-127 451.1
Lac6g3038 . 16 351 MAP Kinase Kinase Gene Family AT4G26070 54.7 2.2e-108 389.8
Lac3g1054 . 133 443 MAP Kinase Kinase Gene Family AT4G29810 67.5 3.6e-127 452.2
Lac6g3082 . 10 325 MAP Kinase Kinase Gene Family AT4G29810 64.8 1.8e-118 423.3
Lac6g3038 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.4 8.9e-110 394.4
Lac8g0237 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.9 2.2e-229 792.3
Lac12g2499 . 1 374 MAP Kinase Kinase Gene Family AT1G51660 69.1 1.1e-126 450.7
Lac10g0307 . 45 314 MAP Kinase Kinase Gene Family AT1G51660 55.6 5.9e-83 305.4
Lac12g2499 . 1 374 MAP Kinase Kinase Gene Family AT3G21220 67.7 4.8e-127 451.8
Lac10g0307 . 40 310 MAP Kinase Kinase Gene Family AT3G21220 55.4 1.0e-84 311.2
Lac6g3038 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 84.2 1.1e-171 600.1
Lac6g3082 . 1 340 MAP Kinase Kinase Gene Family AT5G56580 57.3 1.4e-110 397.1
Lac3g1054 . 139 469 MAP Kinase Kinase Gene Family AT5G56580 56.8 1.9e-110 396.7
Lac10g0307 . 1 308 MAP Kinase Kinase Gene Family AT1G18350 63.3 6.4e-107 384.8
Lac12g2499 . 76 339 MAP Kinase Kinase Gene Family AT1G18350 52.8 9.0e-77 284.6
Lac10g0307 . 1 296 MAP Kinase Kinase Gene Family AT3G06230 51.6 3.1e-79 292.7
Lac10g0307 . 1 308 MAP Kinase Kinase Gene Family AT1G73500 66.7 1.4e-114 410.2
Lac12g2499 . 80 339 MAP Kinase Kinase Gene Family AT1G73500 53.2 1.8e-77 287.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007196 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86295 PF00069 Pkinase 2.20E-66 CL0016 Lac PK