Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g3043 ATGTCGTGGCAAGTTTACGTCGATGATCATCTGATGTGCGAAATTGAGGGCAATCACCTCACATCTGCGGCCATTATCGGCCATGACGGCAGCGTTTGGGCCCAAAGCGCCGCTTTCCCTCAGTTCAAGGGTGAGGAAATTAGTGCCATCATGAATGACTTCAATGAACCTGGGACGCTTGCTCCAACTGGTTTGTACCTTGGTGGTGCAAAATATATGGTTATCCAAGGCGAGCCTGGAGCTGTTATTCGCGGGAAGAAGGGCCCAGGTGGGGTTACTGTGAAGAAAACTGGTCTGGCTCTAGTCATTGGCATCTATGATGAACCAATGACTCCTGGTCAGTGCAATATGATTGTTGAAAGGCTTGGGGACTATCTCATCGACCAGGGTCTCTAA 396 49.75 MSWQVYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSAAFPQFKGEEISAIMNDFNEPGTLAPTGLYLGGAKYMVIQGEPGAVIRGKKGPGGVTVKKTGLALVIGIYDEPMTPGQCNMIVERLGDYLIDQGL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48024879 48026226 - Lag0007012.1 Lac6g3043 612812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g3043 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Lac6g3043 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
Lac6g3043 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779(InterPro)
Lac6g3043 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Lac6g3043 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779(InterPro)
Lac6g3043 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
Lac6g3043 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
Lac6g3043 131 PANTHER PROFILIN 1 130 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Lac6g3043 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Lac6g3043 131 CDD PROF 2 130 IPR005455 GO:0003779(InterPro)
Lac6g3043 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Lac6g3043 131 SMART prof_2 1 131 IPR005455 GO:0003779(InterPro)
Lac6g3043 131 FunFam Profilin 1 131 - -
Lac6g3043 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Lac6g3043 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Lac6g3043 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Lac6g3043 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Lac6g3043 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779(InterPro)
Lac6g3043 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779(InterPro)
Lac6g3043 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Lac6g3043 131 Pfam Profilin 1 131 IPR048278 GO:0003779(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2933 Lac-Chr4:47677649 Lac6g3043 Lac-Chr6:48024879 9.10E-63 dispersed
Lac6g3043 Lac-Chr6:48024879 Lac6g3044 Lac-Chr6:48028766 2.50E-60 tandem
Lac11g0782 Lac-Chr11:8281545 Lac6g3043 Lac-Chr6:48024879 4.90E-56 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g3043 K05759 - rcu:8265128 240.736