Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac6g3043 | ATGTCGTGGCAAGTTTACGTCGATGATCATCTGATGTGCGAAATTGAGGGCAATCACCTCACATCTGCGGCCATTATCGGCCATGACGGCAGCGTTTGGGCCCAAAGCGCCGCTTTCCCTCAGTTCAAGGGTGAGGAAATTAGTGCCATCATGAATGACTTCAATGAACCTGGGACGCTTGCTCCAACTGGTTTGTACCTTGGTGGTGCAAAATATATGGTTATCCAAGGCGAGCCTGGAGCTGTTATTCGCGGGAAGAAGGGCCCAGGTGGGGTTACTGTGAAGAAAACTGGTCTGGCTCTAGTCATTGGCATCTATGATGAACCAATGACTCCTGGTCAGTGCAATATGATTGTTGAAAGGCTTGGGGACTATCTCATCGACCAGGGTCTCTAA | 396 | 49.75 | MSWQVYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSAAFPQFKGEEISAIMNDFNEPGTLAPTGLYLGGAKYMVIQGEPGAVIRGKKGPGGVTVKKTGLALVIGIYDEPMTPGQCNMIVERLGDYLIDQGL | 131 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 48024879 | 48026226 | - | Lag0007012.1 | Lac6g3043 | 612812 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac6g3043 | 131 | PRINTS | Plant profilin signature | 52 | 66 | IPR005455 | GO:0003779(InterPro) | |
Lac6g3043 | 131 | PRINTS | Plant profilin signature | 84 | 99 | IPR005455 | GO:0003779(InterPro) | |
Lac6g3043 | 131 | PRINTS | Plant profilin signature | 104 | 117 | IPR005455 | GO:0003779(InterPro) | |
Lac6g3043 | 131 | PRINTS | Plant profilin signature | 1 | 14 | IPR005455 | GO:0003779(InterPro) | |
Lac6g3043 | 131 | PRINTS | Plant profilin signature | 117 | 130 | IPR005455 | GO:0003779(InterPro) | |
Lac6g3043 | 131 | PRINTS | Plant profilin signature | 27 | 40 | IPR005455 | GO:0003779(InterPro) | |
Lac6g3043 | 131 | PRINTS | Plant profilin signature | 71 | 80 | IPR005455 | GO:0003779(InterPro) | |
Lac6g3043 | 131 | PANTHER | PROFILIN | 1 | 130 | IPR005455 | GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER) | |
Lac6g3043 | 131 | SUPERFAMILY | Profilin (actin-binding protein) | 2 | 130 | IPR036140 | - | |
Lac6g3043 | 131 | CDD | PROF | 2 | 130 | IPR005455 | GO:0003779(InterPro) | |
Lac6g3043 | 131 | Gene3D | Dynein light chain 2a, cytoplasmic | 1 | 131 | - | - | |
Lac6g3043 | 131 | SMART | prof_2 | 1 | 131 | IPR005455 | GO:0003779(InterPro) | |
Lac6g3043 | 131 | FunFam | Profilin | 1 | 131 | - | - | |
Lac6g3043 | 131 | ProSitePatterns | Profilin signature. | 1 | 8 | IPR027310 | GO:0003779(InterPro) | |
Lac6g3043 | 131 | PRINTS | Profilin signature | 3 | 12 | IPR005455 | GO:0003779(InterPro) | |
Lac6g3043 | 131 | PRINTS | Profilin signature | 40 | 60 | IPR005455 | GO:0003779(InterPro) | |
Lac6g3043 | 131 | PRINTS | Profilin signature | 21 | 30 | IPR005455 | GO:0003779(InterPro) | |
Lac6g3043 | 131 | PRINTS | Profilin signature | 113 | 130 | IPR005455 | GO:0003779(InterPro) | |
Lac6g3043 | 131 | PRINTS | Profilin signature | 100 | 113 | IPR005455 | GO:0003779(InterPro) | |
Lac6g3043 | 131 | PRINTS | Profilin signature | 64 | 78 | IPR005455 | GO:0003779(InterPro) | |
Lac6g3043 | 131 | Pfam | Profilin | 1 | 131 | IPR048278 | GO:0003779(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac4g2933 | Lac-Chr4:47677649 | Lac6g3043 | Lac-Chr6:48024879 | 9.10E-63 | dispersed | |
Lac6g3043 | Lac-Chr6:48024879 | Lac6g3044 | Lac-Chr6:48028766 | 2.50E-60 | tandem | |
Lac11g0782 | Lac-Chr11:8281545 | Lac6g3043 | Lac-Chr6:48024879 | 4.90E-56 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac6g3043 | K05759 | - | rcu:8265128 | 240.736 |