Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g3049 ATGAAGATCGTGGAATTGGAAGATGCTGGGTCTGATCGGGAAGAAGAAATCGGCAGTGGTCAGATTGTGAAGGTCGATGCTAAAAGAGCGTTGGTTGGGGCTGGGGCTCGAATCTTGTTTTATCCTACCCTTTTGTATAACGTGCTTCGGAATAAAATGGAAGCTGAATTCAGATGGTGGGATGAAGTCGATCAGTTTCTGTTGCTGGGTGCAGTGCCTTTCCCCAAAGACGTGCCGAGATTGAAGAAGCTTGGTGTTGGCGGCGTTATCACTCTCAATGAACCTTATGAAACACTAGTTCCATCTTCCTTATATTATCGCCATGGAATTGACCACTTAAAGATCCCCACGAGAGATTATTGTTTTGCTCCTAAATTTTCTGATATTAGCAGAGCTGTGGACTTTATTCACAGAAATGCATCTTCTGGTAAAACAACATACGTCCATTGTAAAGCAGGACGAGGAAGGAGCACGACCATTGTGCTTTGCTATTTGGTCAAATATAAGCACATGACCCCGTCTGCTGCCCTAGAATACGTGCGCTCTAGAAGGCCACGAGTGTTGCTCGCCCCTTCGCAGTGGGAGGCTGTTCAAGAATACAGCAACCGTCGACCAGTTACAAGTTCAAGCTCACCCTCAGGAGGAGATGCGGTGCTCATTACAAAAGACGATCTAGAAGGATACCACGGTACATGCATCGACAGTGCGGGTAGAGAACTTGCAGTCGTCCCTAGGATGGGTAAGTCAAAGCCGATGATAGCAAGGTTGTCATGCCTATTTTCCTCTTTGATAGTTCATGGCAGTAGTGGATCTCTCATTAAGCGTCTGCCCGTGTCGGAGGCTCGTGCTTGTTGA 855 47.02 MKIVELEDAGSDREEEIGSGQIVKVDAKRALVGAGARILFYPTLLYNVLRNKMEAEFRWWDEVDQFLLLGAVPFPKDVPRLKKLGVGGVITLNEPYETLVPSSLYYRHGIDHLKIPTRDYCFAPKFSDISRAVDFIHRNASSGKTTYVHCKAGRGRSTTIVLCYLVKYKHMTPSAALEYVRSRRPRVLLAPSQWEAVQEYSNRRPVTSSSSPSGGDAVLITKDDLEGYHGTCIDSAGRELAVVPRMGKSKPMIARLSCLFSSLIVHGSSGSLIKRLPVSEARAC 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48084646 48086771 + Lag0007018.1 Lac6g3049 612818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g3049 284 Gene3D Protein tyrosine phosphatase superfamily 59 205 IPR029021 -
Lac6g3049 284 FunFam Dual specificity phosphatase domain protein 59 206 - -
Lac6g3049 284 CDD PTPMT1 59 203 IPR044596 GO:0004721(InterPro)
Lac6g3049 284 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 195 IPR000387 GO:0016311(InterPro)
Lac6g3049 284 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 52 201 IPR029021 -
Lac6g3049 284 Pfam Dual specificity phosphatase, catalytic domain 99 202 IPR000340 GO:0016311(InterPro)
Lac6g3049 284 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311(InterPro)
Lac6g3049 284 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 206 IPR020422 GO:0006470(InterPro)
Lac6g3049 284 SMART dsp_5 62 203 IPR020422 GO:0006470(InterPro)
Lac6g3049 284 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 2 256 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g0369 Lac-Chr5:3875892 Lac6g3049 Lac-Chr6:48084646 6.30E-76 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g3049 - - - 0.0