Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g3049 ATGAAGATCGTGGAATTGGAAGATGCTGGGTCTGATCGGGAAGAAGAAATCGGCAGTGGTCAGATTGTGAAGGTCGATGCTAAAAGAGCGTTGGTTGGGGCTGGGGCTCGAATCTTGTTTTATCCTACCCTTTTGTATAACGTGCTTCGGAATAAAATGGAAGCTGAATTCAGATGGTGGGATGAAGTCGATCAGTTTCTGTTGCTGGGTGCAGTGCCTTTCCCCAAAGACGTGCCGAGATTGAAGAAGCTTGGTGTTGGCGGCGTTATCACTCTCAATGAACCTTATGAAACACTAGTTCCATCTTCCTTATATTATCGCCATGGAATTGACCACTTAAAGATCCCCACGAGAGATTATTGTTTTGCTCCTAAATTTTCTGATATTAGCAGAGCTGTGGACTTTATTCACAGAAATGCATCTTCTGGTAAAACAACATACGTCCATTGTAAAGCAGGACGAGGAAGGAGCACGACCATTGTGCTTTGCTATTTGGTCAAATATAAGCACATGACCCCGTCTGCTGCCCTAGAATACGTGCGCTCTAGAAGGCCACGAGTGTTGCTCGCCCCTTCGCAGTGGGAGGCTGTTCAAGAATACAGCAACCGTCGACCAGTTACAAGTTCAAGCTCACCCTCAGGAGGAGATGCGGTGCTCATTACAAAAGACGATCTAGAAGGATACCACGGTACATGCATCGACAGTGCGGGTAGAGAACTTGCAGTCGTCCCTAGGATGGGTAAGTCAAAGCCGATGATAGCAAGGTTGTCATGCCTATTTTCCTCTTTGATAGTTCATGGCAGTAGTGGATCTCTCATTAAGCGTCTGCCCGTGTCGGAGGCTCGTGCTTGTTGA 855 47.02 MKIVELEDAGSDREEEIGSGQIVKVDAKRALVGAGARILFYPTLLYNVLRNKMEAEFRWWDEVDQFLLLGAVPFPKDVPRLKKLGVGGVITLNEPYETLVPSSLYYRHGIDHLKIPTRDYCFAPKFSDISRAVDFIHRNASSGKTTYVHCKAGRGRSTTIVLCYLVKYKHMTPSAALEYVRSRRPRVLLAPSQWEAVQEYSNRRPVTSSSSPSGGDAVLITKDDLEGYHGTCIDSAGRELAVVPRMGKSKPMIARLSCLFSSLIVHGSSGSLIKRLPVSEARAC 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48084646 48086771 + Lag0007018.1 Lac6g3049 612818

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g3049 284 Gene3D Protein tyrosine phosphatase superfamily 59 205 IPR029021 -
Lac6g3049 284 FunFam Dual specificity phosphatase domain protein 59 206 - -
Lac6g3049 284 CDD PTPMT1 59 203 IPR044596 GO:0004721(InterPro)
Lac6g3049 284 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 195 IPR000387 GO:0016311(InterPro)
Lac6g3049 284 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 52 201 IPR029021 -
Lac6g3049 284 Pfam Dual specificity phosphatase, catalytic domain 99 202 IPR000340 GO:0016311(InterPro)
Lac6g3049 284 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311(InterPro)
Lac6g3049 284 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 206 IPR020422 GO:0006470(InterPro)
Lac6g3049 284 SMART dsp_5 62 203 IPR020422 GO:0006470(InterPro)
Lac6g3049 284 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 2 256 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g3049 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g0369 Lac-Chr5:3875892 Lac6g3049 Lac-Chr6:48084646 6.30E-76 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac1g2600 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 7.2e-190 661.4
Lac12g0225 . 6 611 Protein tyrosine phosphatase (PTP) family AT3G50110 55.4 6.8e-180 628.2
Lac8g0876 . 1 406 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 6.2e-158 554.7
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1169.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT5G04540 66.2 0.0e+00 1116.3
Lac3g0209 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 51.7 0.0e+00 1085.5
Lac2g2055 . 84 237 Protein tyrosine phosphatase (PTP) family AT1G71860 56.8 4.2e-43 172.9
Lac3g0027 . 1 760 Protein tyrosine phosphatase (PTP) family AT5G23720 66.4 8.1e-275 944.1
Lac12g2326 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 59.4 9.3e-44 174.1
Lac12g0829 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 5.1e-72 268.1
Lac13g0651 . 140 324 Protein tyrosine phosphatase (PTP) family AT3G52180 75.7 8.6e-82 301.2
Lac13g1219 . 33 282 Protein tyrosine phosphatase (PTP) family AT3G10940 71.5 4.5e-107 385.2
Lac8g0287 . 29 477 Protein tyrosine phosphatase (PTP) family AT3G01510 73.3 1.6e-204 709.5
Lac9g2220 . 9 212 Protein tyrosine phosphatase (PTP) family AT2G32960 59.8 1.2e-74 277.3
Lac12g0819 . 33 241 Protein tyrosine phosphatase (PTP) family AT2G32960 63.4 6.6e-73 271.6
Lac5g0369 . 1 332 Protein tyrosine phosphatase (PTP) family AT2G35680 54.4 7.7e-98 354.8
Lac6g3049 . 12 263 Protein tyrosine phosphatase (PTP) family AT2G35680 54.7 2.5e-80 296.6
Lac6g3049 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.1e-45 180.6
Lac9g2220 . 18 212 Protein tyrosine phosphatase (PTP) family AT4G03960 70.8 4.4e-77 285.0
Lac12g0819 . 42 241 Protein tyrosine phosphatase (PTP) family AT4G03960 64.5 1.1e-70 263.8
Lac3g1690 . 120 291 Protein tyrosine phosphatase (PTP) family AT4G03960 57.0 1.3e-55 213.8
Lac3g1690 . 115 304 Protein tyrosine phosphatase (PTP) family AT3G02800 70.0 6.3e-79 291.2
Lac9g2220 . 34 206 Protein tyrosine phosphatase (PTP) family AT3G02800 60.1 9.9e-56 214.2
Lac12g0819 . 40 230 Protein tyrosine phosphatase (PTP) family AT3G02800 50.3 5.6e-51 198.4
Lac13g0933 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 1.4e-62 238.8
Lac8g0876 . 1 406 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 6.2e-158 554.7
Lac12g0225 . 32 611 Protein tyrosine phosphatase (PTP) family AT3G19420 65.7 5.1e-217 751.5
Lac1g2600 . 31 606 Protein tyrosine phosphatase (PTP) family AT3G19420 62.7 1.6e-202 703.4
Lac1g2600 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 7.2e-190 661.4
Lac12g0225 . 6 611 Protein tyrosine phosphatase (PTP) family AT3G50110 55.4 6.8e-180 628.2
Lac3g0209 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 51.7 0.0e+00 1085.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1169.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT5G04540 66.2 0.0e+00 1116.3
Lac9g2686 . 17 246 Protein tyrosine phosphatase (PTP) family AT3G44620 56.3 3.7e-71 265.8
Lac5g0274 . 23 309 Protein tyrosine phosphatase (PTP) family AT2G35320 63.8 3.7e-107 385.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006019 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 4 1 38