Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac6g3056 | ATGATGATCGGCGAGCAACCCAACCGCTCGAATCCGACGGTTATCATTCCTCCGTGGACGTTTATGGATGATCCGGCGTCGGATGTGTACAGTCATTCGCCGGGGAGCGGCGGGAGCAGCGGCAGCGTCAAGTGCGATGGATGTTCCAGCGGAGGTGGATACTCTTCGTATAGAATGCAGGATGCAATGGCGATGCTGCACCGGTATGTACCGTTGATGGACCCGCCGTTGATGGAGCCGGAGATGGACTCGGATTTCGAAGTTTCAGGTCAGGAGCCGGATTCTGCGGTGGATACGTACTCCTCTGATCAGTTTCGAATGTATGAGTTCAAGATTAAGAAGTGTACGAGAGGAAGATCGCATGACTGGACTGAGTGTCCGTTCGCTCATCCCGGCGAGAAGGCTCGCCGGAGAGATCCAAGGAGGTTTTACTATTCCGGTACGGCGTGTGCGGATTTTCGGAAGGGAAGCTGTAAGAAAGGAGATGCGTGTGAGTTTGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGTTATCGGACTCAGCCATGCAAGGATGGAACGAGTTGCCGGAGGAGAGTTTGCTTCTTCGCTCATACGCCGGAGCAACTTAGGGTTTTGCCTCAGCAGAGTCCTAAAAGTACGAACTCCATCCCTTCGTACGACGGATCGCCTCTCCGACATGCGATTGAAGCCTGTGCGAAACAGATGCCCTTTTTATCTTCTCCAGGAACATCGCCGCCAGTATCTCCACGAATCGAGTCTCCACCACAATCGCCGATGATTAAATCACGAAATCGACCACGCGCAACAAGTCCGATCAACGAAATGGTAGCGTCACTACGAAATTTACAGCTCAGTAAGGAACTCGGTATGGTGCAATCTCCATCTTCCTTGTGGAATGTTCAAGTCGGATCTCCAGTACTCGGATCTCCAAAGGAATCCACTCCTCGATCCGGTTTCTGTAGCCTTCCAGACACTCCGACTCGTCCATTTCTCCGATATCTCGATTTCTGGGACCTAGGTTGCGGAGAGGAGCCGGCGATGGAGCGAGTGGAGTCCGGGAGAAATCTACGAGCAAAAATGCTGGAGAAATTAAGGAAGGAGAACTCCGTCGGCTGCGGCGATCATGAAAAATACAACGGCGGAAGCGGCGGCGGAGGTCTGGACGTCGATTGGATCTCCGAGCTACTCAAGTAA | 1203 | 52.95 | MMIGEQPNRSNPTVIIPPWTFMDDPASDVYSHSPGSGGSSGSVKCDGCSSGGGYSSYRMQDAMAMLHRYVPLMDPPLMEPEMDSDFEVSGQEPDSAVDTYSSDQFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDPRRFYYSGTACADFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPKSTNSIPSYDGSPLRHAIEACAKQMPFLSSPGTSPPVSPRIESPPQSPMIKSRNRPRATSPINEMVASLRNLQLSKELGMVQSPSSLWNVQVGSPVLGSPKESTPRSGFCSLPDTPTRPFLRYLDFWDLGCGEEPAMERVESGRNLRAKMLEKLRKENSVGCGDHEKYNGGSGGGGLDVDWISELLK | 400 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 48163544 | 48164746 | + | Lag0007025.1 | Lac6g3056 | 612825 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac6g3056 | 400 | ProSiteProfiles | Zinc finger C3H1-type profile. | 144 | 171 | IPR000571 | GO:0046872(InterPro) | |
| Lac6g3056 | 400 | SMART | c3hfinal6 | 179 | 202 | IPR000571 | GO:0046872(InterPro) | |
| Lac6g3056 | 400 | SMART | c3hfinal6 | 144 | 170 | IPR000571 | GO:0046872(InterPro) | |
| Lac6g3056 | 400 | FunFam | Zinc finger CCCH domain-containing protein 66 | 102 | 170 | - | - | |
| Lac6g3056 | 400 | PANTHER | UNKEMPT FAMILY MEMBER | 53 | 400 | IPR045234 | - | |
| Lac6g3056 | 400 | Gene3D | - | 145 | 208 | - | - | |
| Lac6g3056 | 400 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 148 | 169 | IPR000571 | GO:0046872(InterPro) | |
| Lac6g3056 | 400 | MobiDBLite | consensus disorder prediction | 242 | 270 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac2g0440 | Lac-Chr2:3241725 | Lac6g3056 | Lac-Chr6:48163544 | 8.40E-84 | dispersed | |
| Lac5g2755 | Lac-Chr5:45962772 | Lac6g3056 | Lac-Chr6:48163544 | 5.80E-46 | dispersed | |
| Lac6g0213 | Lac-Chr6:1667496 | Lac6g3056 | Lac-Chr6:48163544 | 2.70E-62 | dispersed | |
| Lac6g3056 | Lac-Chr6:48163544 | Lac9g2386 | Lac-Chr9:43013698 | 4.50E-52 | dispersed | |
| Lac6g3056 | Lac-Chr6:48163544 | Lac3g0988 | Lac-Chr3:8046319 | 4.80E-123 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 24091 | PF00642 | zf-CCCH | 1.10E-05 | CL0537 | Lac | TF |
Pathway information