Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g3077 ATGGTCCAGCCTGACGGTGGCGGTGGCGGTGGCGGTGTCTGCCGCGAAGGCGCTGCAACTGCAAGCGATGAAATCATGGATGTATTCAACGAGCCACAGATTCAAAAGACTGTTAAGGAAGAGGAGATAGAGGAGCAAGAGCTCAATCGCAATAACAATGGTAATAGTTTCAATAACGACCTAATTCTATTAGATGGATCGGCTTCTTCTTCTTGTTCTTCTTGTTTAATTAAAGAAGAAACCACGGCGGCGATGAACGGCGACGGAGCTTCTGATTGCAGCGGCGATGGCGGTTCTGCGTCATCGGCGAAACCAATGGTAGGGTTGCATGAGATCGGGCCGCCGCCGTTTCTGAAGAAGACGTATGAGATGGTGGAGGATCCGGAAACCGACCCGGTTGTATCGTGGAGTCAAGCTCGCAATAGCTTCATTGTTTGGGATTCTCATCAACTCTCCAAAAATCTTCTCCCCAAATACTTCAAGCACTGCAATTTCTCCAGCTTCATTCGCCAGCTTAATACTTATGGTTTTAGGAAGATTGATTCTGATAAATGGGAGTTTGCAAATGAAGGGTTTCAGGGAGGGAAGAAACATTTGCTCAAGAATATTAAGAGAAGAAGCAGGTACAATTACAACAAGCAGCATTTAGCCATGGCAATGACTTTACAAGATTTGACAAAGCCAGGAGTGGAAACAGAGCTTGAAGCTCTGAAAACTGATAACAACTTTTTGAAAGTAGAGATCTTGAAGCTCAGAGAGCAGCAGCAGGACTCACAGAACCAACTCACCGAGGTCGAAGAGCGCGTCCGGTGCGTCGAGTGCAAGCAGCAACAGATGTCCTCTTTCCTTACCAAAATGTCGAGCAACCCCACCTTTTTCCGACAGTTGGCCCAGAAGAGAATGCTTAGAAAGGAGCTGAATGAGATTGAGTTTGGAAAGAAAAGGAGATTACTTGCAATGCAAGGCCATGAAAATTTCGGCCTCAAGCCAATCGATGCTTCTCGGGATGTTAATTGTGAAAACCATGTCCAAGTCCAAGAAAGCCTTCTGAGCATGCAGTCTGAGCTCAATGAAATGTTTCCAGAAGTTGTCGAACCAGGACTGGTCGAAACGCCATTCCAAGCATCGATGAATAGTAAATCAAGAAGTTCAGATGCTGCTTGTATGCCACCATCCAATATATTTGCAGAGAATATGGTGGTTGATGAAGAATTGACTTCTAATGACTCCAAATTCTTTCTGGAACTGGAGGATCTGATCAAGAAGCCTCATGATTGTGCTGGTTATGTACAGAAACAAGTTTTCCATGGCTGTGTTGGATCCATTCCATGA 1332 45.35 MVQPDGGGGGGGVCREGAATASDEIMDVFNEPQIQKTVKEEEIEEQELNRNNNGNSFNNDLILLDGSASSSCSSCLIKEETTAAMNGDGASDCSGDGGSASSAKPMVGLHEIGPPPFLKKTYEMVEDPETDPVVSWSQARNSFIVWDSHQLSKNLLPKYFKHCNFSSFIRQLNTYGFRKIDSDKWEFANEGFQGGKKHLLKNIKRRSRYNYNKQHLAMAMTLQDLTKPGVETELEALKTDNNFLKVEILKLREQQQDSQNQLTEVEERVRCVECKQQQMSSFLTKMSSNPTFFRQLAQKRMLRKELNEIEFGKKRRLLAMQGHENFGLKPIDASRDVNCENHVQVQESLLSMQSELNEMFPEVVEPGLVETPFQASMNSKSRSSDAACMPPSNIFAENMVVDEELTSNDSKFFLELEDLIKKPHDCAGYVQKQVFHGCVGSIP 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48329260 48331144 + Lag0007046.1 Lac6g3077 612846

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g3077 443 SMART hsfneu3 113 206 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g3077 443 SUPERFAMILY Winged helix DNA-binding domain 113 206 IPR036390 -
Lac6g3077 443 ProSitePatterns HSF-type DNA-binding domain signature. 156 180 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g3077 443 Gene3D - 110 207 IPR036388 -
Lac6g3077 443 PRINTS Heat shock factor (HSF) domain signature 168 180 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g3077 443 PRINTS Heat shock factor (HSF) domain signature 117 140 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g3077 443 PRINTS Heat shock factor (HSF) domain signature 155 167 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g3077 443 Coils Coil 234 275 - -
Lac6g3077 443 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 86 392 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0034605(PANTHER)
Lac6g3077 443 Pfam HSF-type DNA-binding 117 206 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g3077 443 FunFam Heat shock transcription factor 1 110 207 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g3077 K09419 - - csv:101213275 426.402
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0181 Lac-Chr6:1432628 Lac6g3077 Lac-Chr6:48329260 1.00E-61 dispersed
Lac6g2993 Lac-Chr6:47535875 Lac6g3077 Lac-Chr6:48329260 7.40E-36 dispersed
Lac6g3077 Lac-Chr6:48329260 Lac7g0435 Lac-Chr7:3347276 2.20E-39 dispersed
Lac6g3077 Lac-Chr6:48329260 Lac4g2238 Lac-Chr4:42086952 7.90E-58 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g0181 . 168 368 HSF AT4G17750 55.0 1.0e-58 225.3
Lac4g2238 . 53 288 HSF AT4G17750 51.0 1.0e-58 225.3
Lac11g2665 . 43 245 HSF AT4G17750 54.4 1.2e-57 221.9
Lac13g1296 . 15 262 HSF AT4G17750 50.7 1.7e-56 218.0
Lac6g3077 . 114 317 HSF AT4G17750 52.1 1.0e-50 198.7
Lac11g2126 . 52 174 HSF AT4G17750 61.0 1.2e-38 158.7
Lac6g0293 . 20 118 HSF AT4G17750 70.7 2.0e-38 157.9
Lac2g0331 . 20 118 HSF AT4G17750 69.7 3.5e-38 157.1
Lac11g2665 . 44 249 HSF AT5G16820 56.9 3.1e-60 230.3
Lac4g2238 . 54 261 HSF AT5G16820 57.9 1.2e-59 228.4
Lac6g0181 . 169 367 HSF AT5G16820 52.7 1.4e-55 214.9
Lac7g0435 . 328 524 HSF AT5G16820 50.7 4.5e-51 199.9
Lac13g1296 . 11 242 HSF AT5G16820 50.2 5.9e-51 199.5
Lac6g3077 . 115 299 HSF AT5G16820 53.9 8.0e-48 189.1
Lac1g3441 . 9 191 HSF AT5G16820 50.3 1.3e-42 171.8
Lac3g0896 . 11 178 HSF AT5G16820 50.5 4.3e-41 166.8
Lac5g0201 . 11 508 HSF AT1G32330 54.6 1.1e-121 434.5
Lac4g2238 . 42 257 HSF AT1G32330 53.5 9.2e-60 228.8
Lac11g2665 . 32 229 HSF AT1G32330 53.1 3.6e-56 216.9
Lac6g0181 . 157 350 HSF AT1G32330 53.9 8.9e-55 212.2
Lac7g0435 . 326 502 HSF AT1G32330 51.1 2.3e-47 187.6
Lac6g0293 . 20 117 HSF AT1G32330 70.4 1.3e-37 155.2
Lac11g2665 . 44 264 HSF AT3G02990 55.3 1.3e-63 241.5
Lac4g2238 . 54 271 HSF AT3G02990 55.1 2.3e-60 230.7
Lac6g0181 . 169 368 HSF AT3G02990 52.7 2.1e-56 217.6
Lac4g2238 . 42 256 HSF AT2G26150 57.9 6.1e-66 248.8
Lac6g3077 . 98 317 HSF AT2G26150 53.8 4.5e-61 232.6
Lac5g0201 . 13 239 HSF AT2G26150 57.0 7.8e-61 231.9
Lac7g0435 . 326 778 HSF AT4G13980 52.0 1.0e-116 417.9
Lac6g0181 . 157 360 HSF AT5G43840 52.9 2.1e-48 190.3
Lac4g2238 . 14 368 HSF AT3G22830 50.1 6.7e-96 348.6
Lac11g2665 . 32 344 HSF AT3G22830 50.4 8.2e-86 315.1
Lac5g0201 . 25 238 HSF AT3G22830 58.9 1.3e-62 238.0
Lac4g2238 . 41 343 HSF AT3G51910 53.2 1.0e-71 267.7
Lac11g2665 . 32 324 HSF AT3G51910 52.5 4.2e-70 262.3
Lac6g0181 . 157 373 HSF AT3G51910 52.5 7.7e-56 214.9
Lac11g2665 . 32 336 HSF AT3G63350 50.2 3.5e-67 252.7
Lac6g0181 . 157 356 HSF AT3G63350 52.9 7.0e-52 201.8
Lac4g2238 . 55 243 HSF AT1G67970 52.1 1.7e-45 181.0
Lac6g3077 . 109 318 HSF AT5G54070 53.5 7.5e-53 205.3
Lac1g2563 . 2 301 HSF AT4G36990 51.8 2.8e-72 269.6
Lac6g0293 . 17 115 HSF AT5G62020 67.7 1.2e-38 157.9
Lac11g2126 . 75 396 HSF AT4G11660 53.7 8.1e-80 295.0
Lac2g0331 . 16 122 HSF AT4G11660 72.9 6.5e-45 179.1
Lac6g0293 . 16 119 HSF AT4G11660 74.0 1.1e-44 178.3
Lac1g2563 . 2 100 HSF AT4G11660 73.7 1.4e-42 171.4
Lac3g1474 . 20 118 HSF AT4G11660 66.7 1.7e-37 154.5
Lac7g2097 . 12 110 HSF AT4G11660 68.7 3.8e-37 153.3
Lac7g2097 . 17 216 HSF AT2G41690 54.7 3.9e-51 199.1
Lac1g1310 . 45 231 HSF AT2G41690 54.1 9.7e-50 194.5
Lac2g0331 . 1 338 HSF AT1G46264 52.2 6.1e-90 328.6
Lac6g0293 . 19 378 HSF AT1G46264 51.6 5.9e-85 312.0
Lac3g1474 . 22 208 HSF AT1G46264 57.5 2.5e-59 226.9
Lac1g2563 . 4 198 HSF AT1G46264 51.2 1.1e-51 201.4
Lac5g0201 . 29 132 HSF AT1G46264 72.1 3.4e-40 163.3
Lac9g2235 . 9 106 HSF AT1G46264 71.4 2.7e-37 153.7
Lac3g0896 . 10 297 HSF AT3G24520 51.4 6.5e-65 245.4
Lac6g0181 . 168 368 HSF AT4G17750 55.0 1.0e-58 225.3
Lac4g2238 . 53 288 HSF AT4G17750 51.0 1.0e-58 225.3
Lac11g2665 . 43 245 HSF AT4G17750 54.4 1.2e-57 221.9
Lac13g1296 . 15 262 HSF AT4G17750 50.7 1.7e-56 218.0
Lac6g3077 . 114 317 HSF AT4G17750 52.1 1.0e-50 198.7
Lac11g2126 . 52 174 HSF AT4G17750 61.0 1.2e-38 158.7
Lac6g0293 . 20 118 HSF AT4G17750 70.7 2.0e-38 157.9
Lac2g0331 . 20 118 HSF AT4G17750 69.7 3.5e-38 157.1
Lac11g2665 . 44 249 HSF AT5G16820 56.9 3.1e-60 230.3
Lac4g2238 . 54 261 HSF AT5G16820 57.9 1.2e-59 228.4
Lac6g0181 . 169 367 HSF AT5G16820 52.7 1.4e-55 214.9
Lac7g0435 . 328 524 HSF AT5G16820 50.7 4.5e-51 199.9
Lac13g1296 . 11 242 HSF AT5G16820 50.2 5.9e-51 199.5
Lac6g3077 . 115 299 HSF AT5G16820 53.9 8.0e-48 189.1
Lac1g3441 . 9 191 HSF AT5G16820 50.3 1.3e-42 171.8
Lac3g0896 . 11 178 HSF AT5G16820 50.5 4.3e-41 166.8
Lac5g0201 . 11 508 HSF AT1G32330 54.6 1.1e-121 434.5
Lac4g2238 . 42 257 HSF AT1G32330 53.5 9.2e-60 228.8
Lac11g2665 . 32 229 HSF AT1G32330 53.1 3.6e-56 216.9
Lac6g0181 . 157 350 HSF AT1G32330 53.9 8.9e-55 212.2
Lac7g0435 . 326 502 HSF AT1G32330 51.1 2.3e-47 187.6
Lac6g0293 . 20 117 HSF AT1G32330 70.4 1.3e-37 155.2
Lac11g2665 . 44 264 HSF AT3G02990 55.3 1.3e-63 241.5
Lac4g2238 . 54 271 HSF AT3G02990 55.1 2.3e-60 230.7
Lac6g0181 . 169 368 HSF AT3G02990 52.7 2.1e-56 217.6
Lac4g2238 . 42 256 HSF AT2G26150 57.9 6.1e-66 248.8
Lac6g3077 . 98 317 HSF AT2G26150 53.8 4.5e-61 232.6
Lac5g0201 . 13 239 HSF AT2G26150 57.0 7.8e-61 231.9
Lac7g0435 . 326 778 HSF AT4G13980 52.0 1.0e-116 417.9
Lac6g0181 . 157 360 HSF AT5G43840 52.9 2.1e-48 190.3
Lac4g2238 . 14 368 HSF AT3G22830 50.1 6.7e-96 348.6
Lac11g2665 . 32 344 HSF AT3G22830 50.4 8.2e-86 315.1
Lac5g0201 . 25 238 HSF AT3G22830 58.9 1.3e-62 238.0
Lac4g2238 . 41 343 HSF AT3G51910 53.2 1.0e-71 267.7
Lac11g2665 . 32 324 HSF AT3G51910 52.5 4.2e-70 262.3
Lac6g0181 . 157 373 HSF AT3G51910 52.5 7.7e-56 214.9
Lac11g2665 . 32 336 HSF AT3G63350 50.2 3.5e-67 252.7
Lac6g0181 . 157 356 HSF AT3G63350 52.9 7.0e-52 201.8
Lac4g2238 . 55 243 HSF AT1G67970 52.1 1.7e-45 181.0
Lac6g3077 . 109 318 HSF AT5G54070 53.5 7.5e-53 205.3
Lac1g2563 . 2 301 HSF AT4G36990 51.8 2.8e-72 269.6
Lac6g0293 . 17 115 HSF AT5G62020 67.7 1.2e-38 157.9
Lac11g2126 . 75 396 HSF AT4G11660 53.7 8.1e-80 295.0
Lac2g0331 . 16 122 HSF AT4G11660 72.9 6.5e-45 179.1
Lac6g0293 . 16 119 HSF AT4G11660 74.0 1.1e-44 178.3
Lac1g2563 . 2 100 HSF AT4G11660 73.7 1.4e-42 171.4
Lac3g1474 . 20 118 HSF AT4G11660 66.7 1.7e-37 154.5
Lac7g2097 . 12 110 HSF AT4G11660 68.7 3.8e-37 153.3
Lac7g2097 . 17 216 HSF AT2G41690 54.7 3.9e-51 199.1
Lac1g1310 . 45 231 HSF AT2G41690 54.1 9.7e-50 194.5
Lac2g0331 . 1 338 HSF AT1G46264 52.2 6.1e-90 328.6
Lac6g0293 . 19 378 HSF AT1G46264 51.6 5.9e-85 312.0
Lac3g1474 . 22 208 HSF AT1G46264 57.5 2.5e-59 226.9
Lac1g2563 . 4 198 HSF AT1G46264 51.2 1.1e-51 201.4
Lac5g0201 . 29 132 HSF AT1G46264 72.1 3.4e-40 163.3
Lac9g2235 . 9 106 HSF AT1G46264 71.4 2.7e-37 153.7
Lac3g0896 . 10 297 HSF AT3G24520 51.4 6.5e-65 245.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010256 3 2 2 2 2 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 0 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24094 PF00447 HSF_DNA-bind 6.90E-32 CL0123 Lac TF