Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g3081 ATGACCTCCGTGGCGGTTGCCGTTAACGGCGTCCGCGGCGGCAAAGGCGGCGGCGGAAGCCGCCGCGCCGTCAGATGGGCCGTCGAGAATCTCTTGCCAACCGCCGATCGTTTCATTTTGGTTCACGTTATGCCCAAAATCACCTCCATTCCCACCCCAATGGGGGATCGCGTGGCTGTCTCGGAACTCGATGCAGATGTTGTAGCACTTTATGTGCACGATGTGAAAGAGAAATATGAACAAGTTTTTGTCCCTTTCAAGAAGTTATGTAGAAGAGAAAAGTTTCTTCTTCTGGTAGAAACTTTGATTTTGGAGGATGACAATCCTGCCACTGCACTTTTGAGATATGCATCTGAATCTGGGATTAAACGCTTGGTTTTGGGTTCTTGTTTTAGAACTTGCATAGCAAGGAAGCTAAAAGGGGATTCGGTACCCTCTTCTGTTCTGAGAACTGCTCCTAGTTCTCTTGATATTTATGTTATATATAGGAGAAGAGTCGTTACAAGAATGGCTAGTACTGCTCTATCTACTGAAACCGATTCGAGGCAGTGGATGCTTGGTGATACTGATTACTATAGGGGTTCAAGTGCCGTTAGTGAAAAATCATCTGGAACTTTTTCTTCTTCTTCCTTGTCGATTGTTCATCGAAGGGGCGATAGCCTCGAAGTTACTTCTACTGAGCAACCGAACTCTTTGAGTACTCTGACTGAGGAGGAAGATATGCGGGCTGAAGTTGAATCACTGCAACTAGAATTAGAAACCACTGTTTCCTTGTACAAACAAGCTTGTGAAGAACTAGTACATGCTCAGAAGAAGGTTCAGTCACTTACATCAGAATGCCTTGAAGAATCAAGAAGAGTAAATGCTGCCTTGGAAAGGGAAGAAACTTTTAGGAAACTTGCTGCTGAAGAAAAAGAAAAGCACTTGGAAGCTATTAAGGAGCTTGAGGAGGCAAAAGACTTGCTGGCTAAAGAAGCTTATGAAAGGCAGCTGGCTGAGCTTAATGCCTTAAAGGAATCCTTGGAGAAGCAGAAAATTGTTGACACTCTTCTGACTAATGATAGGAGGTACCGAAGATATACTACGGCCGAAATCGAAACTGCGACGAATTTCTTCGATGAAGTTAATGTGATCGGCGAGGGAGGATATGGGAAAGTCTACAAATGCAGCCTCGATCATACCCCTGTGGCGATTAAGGTTTTTCAACACGACATATTCGAGAAAAAGGATGAGTTTCTGAAAGAGGTTGAAATTCTGAGCCAGATACGTCATCCACACGTGGTTTTACTGCTCGGAGCTTGTCCAGAGCGAGGTTGTTTGATCTATGAATACATGGAAAATGGAAGCTTAGATGATCATATCTTGCTCCGGAATGGAAAAACTCCCCTTCCTTGGTCTATTAGATTTAGAATAATTTTTCAAGTAGCTTCTGGACTTGCATTTTTACACAATTCAAAGCCAGAGCCTATTATTCATAGAGATCTAAAACCAGGTAATATCTTACTAGACAGAAACTATGTAAGCAAGATCTCTGATGTTGGAATGGCTAAGATCATCGGCGATATCGTGCCCGACAACGTTACGGAGTACAGAAACACCATTCTTGCTGGTACCTTACATTACATGGATCCTGAATATCAGAGAACTGGCACCCTCCGACCAAAGTCAGATACATATGCACTTGGAGTAACAATGCTCCAGTTGTTGACAGGGCGCCAGCCACATGGTCTTCTTCTAGCCGTCGAGAACTCCGTCGCTAGCGCCTCCCTTGCAGATATTCTAGATAAGTCAATTACTGACTGGCCTCTAGCTGAAGCAGAAGAACTAGCTCGACTTGCACTGAAATGCATGAAACTTAGATGCAGGGATAGGCCAGATCTTGAAACTGAAGTCCTTCCTGTCCTTAAAAGGCTTGTTGATTTTGCAGATACTTGTCAAAATGAAGAAAAAGGGTCTGCCAATCCTCCAAGCCACTACTTCTGCCCAATCCTCCAGGAAATAATGGAGGATCCTTATATAGCAGCGGATGGGTTTAGTTACGAGTATGTAGCGATTAAAGCATGGCTCGAGGAACACGACATATCGCCCGTGACAAAGCTTAAGCTTCAGCATTCCATGTTTATTCCAAATCACACTTTGCGTTCTGCCATACAAGAGTGGAGATCAAGAGTGACATTTCCATCTTCCTAA 2190 43.97 MTSVAVAVNGVRGGKGGGGSRRAVRWAVENLLPTADRFILVHVMPKITSIPTPMGDRVAVSELDADVVALYVHDVKEKYEQVFVPFKKLCRREKFLLLVETLILEDDNPATALLRYASESGIKRLVLGSCFRTCIARKLKGDSVPSSVLRTAPSSLDIYVIYRRRVVTRMASTALSTETDSRQWMLGDTDYYRGSSAVSEKSSGTFSSSSLSIVHRRGDSLEVTSTEQPNSLSTLTEEEDMRAEVESLQLELETTVSLYKQACEELVHAQKKVQSLTSECLEESRRVNAALEREETFRKLAAEEKEKHLEAIKELEEAKDLLAKEAYERQLAELNALKESLEKQKIVDTLLTNDRRYRRYTTAEIETATNFFDEVNVIGEGGYGKVYKCSLDHTPVAIKVFQHDIFEKKDEFLKEVEILSQIRHPHVVLLLGACPERGCLIYEYMENGSLDDHILLRNGKTPLPWSIRFRIIFQVASGLAFLHNSKPEPIIHRDLKPGNILLDRNYVSKISDVGMAKIIGDIVPDNVTEYRNTILAGTLHYMDPEYQRTGTLRPKSDTYALGVTMLQLLTGRQPHGLLLAVENSVASASLADILDKSITDWPLAEAEELARLALKCMKLRCRDRPDLETEVLPVLKRLVDFADTCQNEEKGSANPPSHYFCPILQEIMEDPYIAADGFSYEYVAIKAWLEEHDISPVTKLKLQHSMFIPNHTLRSAIQEWRSRVTFPSS 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48360680 48365306 + Lag0007050.1 Lac6g3081 612850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g3081 729 SMART Ubox_2 658 720 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac6g3081 729 PANTHER OS02G0152300 PROTEIN 4 718 IPR051348 -
Lac6g3081 729 Gene3D Phosphorylase Kinase; domain 1 351 444 - -
Lac6g3081 729 Coils Coil 298 347 - -
Lac6g3081 729 Coils Coil 259 279 - -
Lac6g3081 729 Gene3D Transferase(Phosphotransferase) domain 1 445 654 - -
Lac6g3081 729 ProSiteProfiles U-box domain profile. 654 727 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac6g3081 729 FunFam Os07g0541700 protein 445 535 - -
Lac6g3081 729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 655 725 IPR013083 -
Lac6g3081 729 CDD STK_N 3 161 - -
Lac6g3081 729 SUPERFAMILY RING/U-box 646 723 - -
Lac6g3081 729 Pfam U-box domain 656 721 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac6g3081 729 SUPERFAMILY Protein kinase-like (PK-like) 355 628 IPR011009 -
Lac6g3081 729 SMART serkin_6 372 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g3081 729 ProSitePatterns Protein kinases ATP-binding region signature. 378 399 IPR017441 GO:0005524(InterPro)
Lac6g3081 729 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 344 444 - -
Lac6g3081 729 CDD RING-Ubox_WDSUB1-like 656 710 - -
Lac6g3081 729 Gene3D HUPs 2 158 IPR014729 -
Lac6g3081 729 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g3081 729 ProSiteProfiles Protein kinase domain profile. 372 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g3081 729 Pfam Protein tyrosine and serine/threonine kinase 376 628 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g3081 729 Pfam Universal stress protein family 19 155 IPR006016 -
Lac6g3081 729 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 155 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g1163 Lac-Chr6:11055113 Lac6g3081 Lac-Chr6:48360680 6.20E-114 dispersed
Lac6g2191 Lac-Chr6:38373645 Lac6g3081 Lac-Chr6:48360680 1.80E-105 dispersed
Lac6g3081 Lac-Chr6:48360680 Lac7g0234 Lac-Chr7:1834159 1.00E-94 dispersed
Lac11g1756 Lac-Chr11:31848139 Lac6g3081 Lac-Chr6:48360680 3.30E-126 transposed
Lac4g2997 Lac-Chr4:48196099 Lac6g3081 Lac-Chr6:48360680 1.70E-118 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86297 PF07714 PK_Tyr_Ser-Thr 6.10E-42 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g3081 - - - 0.0