Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g3082 ATGAAGAAGGACAGCTCCATGATTCCTAACTTGAAGCTCGTTCTACCTCCTCCCGATGAAGTTTCCTTCTCCTTCATAACCCAAGCCGGTACTTTCACCGATGGCGATTTGCTTGTCAATAGAGACGGCGTGCGGATTGTTTCTCAAGCGGAGGACGAAAGTCCTCCACCGATAAAGCCCTCAGACAACCATTTGTCTTTAGCAGATTTAGATTCAATAAAAGTCATTGGAAAAGGAAATGGCGGAATAGTTCAATTAGTCCGGCATAAATGGACGAACCAGTTTTTTGCTCTAAAGGTGATTCAGATGAATGCCGAGGAATCTTATTGTAAGCTGGTTGCTAAGGAACTAAAAATTAATCAGTTGGCACAAAACCCTTACATTGTTGTCTGTTACCAGATCTTCTATGACAATGGTGCCATTTTCATAATATTGGAGTACATGGACGGTGGCTCACTTGCAGATCTTCTAAAAAAAGTTGAAACAATCCTAGAGCCTTATCTTGCAGCCATTTGTTACCAGGTACTCCAGGGGTTGATATACCTTCACCATGAAAAACATGTCATCCACAGAGACCTTAAGCCTTCTAATTTGTTAATAAATCATAGAGGGGAAGTTAAGATTACTGACTTTGGTGTTAGTGCTATACTGGCGAGTACGTCTGATCAAGCAAATACTTTTGTTGGCACTTACGCTTACATGTCTCCTGAGAGAATCAGTGGGGAAAAATATGACAACAAAAGTGACATATGGAGTTTGGGATTGGTTTTGCTAGAATGTGCAACGGGTCAATTTCCATATACTCCACCAGATAAGGATAAAGGATGGGAAGGCTTCTTTGATGTTATGATAGCTGTAGTAGAATTAGCATCGCCTTCTGCACCCGAACAATTTTCTCCAGAGTTTTGCTCTTTCATTTCTTCATGCCTACAGAAAGACCCGCAGAAGAGAAGCTCTGCACGCGAACTTCTGGTGCATCCTTTCATCAAAAAGTTTGAACACTTCGACGTTGATCTTGCAGCATACTTCAAAGATGCCGGCTCTCCATTGGCAACCTTCTAA 1062 41.81 MKKDSSMIPNLKLVLPPPDEVSFSFITQAGTFTDGDLLVNRDGVRIVSQAEDESPPPIKPSDNHLSLADLDSIKVIGKGNGGIVQLVRHKWTNQFFALKVIQMNAEESYCKLVAKELKINQLAQNPYIVVCYQIFYDNGAIFIILEYMDGGSLADLLKKVETILEPYLAAICYQVLQGLIYLHHEKHVIHRDLKPSNLLINHRGEVKITDFGVSAILASTSDQANTFVGTYAYMSPERISGEKYDNKSDIWSLGLVLLECATGQFPYTPPDKDKGWEGFFDVMIAVVELASPSAPEQFSPEFCSFISSCLQKDPQKRSSARELLVHPFIKKFEHFDVDLAAYFKDAGSPLATF 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48366392 48368720 - Lag0007051.1 Lac6g3082 612851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g3082 353 ProSiteProfiles Protein kinase domain profile. 70 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g3082 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g3082 353 Pfam Protein kinase domain 73 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g3082 353 Gene3D Transferase(Phosphotransferase) domain 1 150 348 - -
Lac6g3082 353 FunFam Mitogen-activated protein kinase kinase 6 151 348 - -
Lac6g3082 353 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 46 349 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Lac6g3082 353 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524(InterPro)
Lac6g3082 353 Gene3D Phosphorylase Kinase; domain 1 48 149 - -
Lac6g3082 353 CDD PKc_MAPKK_plant_like 68 333 - -
Lac6g3082 353 FunFam Mitogen-activated protein kinase kinase 1 51 149 - -
Lac6g3082 353 SUPERFAMILY Protein kinase-like (PK-like) 56 335 IPR011009 -
Lac6g3082 353 SMART serkin_6 70 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1054 Lac-Chr3:8628359 Lac6g3082 Lac-Chr6:48366392 2.20E-143 dispersed
Lac6g3082 Lac-Chr6:48366392 Lac8g0237 Lac-Chr8:2622693 8.50E-63 dispersed
Lac10g0307 Lac-Chr10:2348812 Lac6g3082 Lac-Chr6:48366392 1.30E-62 transposed
Lac6g3038 Lac-Chr6:47962295 Lac6g3082 Lac-Chr6:48366392 1.90E-118 transposed
Lac3g1052 Lac-Chr3:8601265 Lac6g3082 Lac-Chr6:48366392 1.00E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86298 PF00069 Pkinase 1.50E-70 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g3082 K20603 - csv:101206374 672.93