Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac6g3087 | ATGGATGGAGGAGCAGCTTACAATCCTCGGACGGTGGAAGAGGTTTTCAGGGACTTTAAGGGCCGCCGCGCCGGAATGATTAGAGCTCTCACCACCGATGTCGAAGAATTTTATCAGCAGTGCGACCCTGAGAAGGAAAATCTCTGCCTATATGGGTTCCCTAATGAACAGTGGGAAGTTAATTTACCCGCTGAAGAAGTACCACCAGAGCTTCCGGAACCAGCACTGGGCATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTATCCCTTGTTGCCGTTCACAGTGACGCATGGCTGCTTGCTGTGGCTTTCTATTTTGGTGCTAGATTTGGCTTTGATAAATCTGACAGGAAACGCCTTTTTACGATGATAAATGATCTACCCACGATATTTGAGGTTGTGACGGGAAGTGTGAAGAAACAGGGAAAAGACAAGTCATTAGTTTCAAATAACAGCAGCAACAAATCCAAGACAGGCTCAAAAGGGCGAGGATCTGAATCAAGCAAATTGTCCAAGGGGTTGGCAAAAGAAGAGGATGAGGGACTGGATGAGGACGATGAGGAGGAGCACGGGGAGACCTTATGTGGGGCATGCGGGGAGAATTATGCATCAGACGAGTTCTGGATATGTTGCGACATATGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCAAGGGCCGAACATATCAAGCAATACAAATGCCCCTCGTGCAGCAATAAGAGAGCACGGCCCTGA | 756 | 48.02 | MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTDVEEFYQQCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKSDRKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKTGSKGRGSESSKLSKGLAKEEDEGLDEDDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP | 251 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 48395336 | 48397858 | - | Lag0007056.1 | Lac6g3087 | 612856 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac6g3087 | 251 | FunFam | PHD finger alfin-like protein | 189 | 246 | - | - | |
Lac6g3087 | 251 | ProSiteProfiles | Zinc finger PHD-type profile. | 195 | 247 | IPR019787 | - | |
Lac6g3087 | 251 | Pfam | PHD-finger | 198 | 244 | IPR019787 | - | |
Lac6g3087 | 251 | CDD | PHD_AL_plant | 197 | 247 | IPR044104 | - | |
Lac6g3087 | 251 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 188 | 246 | IPR013083 | - | |
Lac6g3087 | 251 | SMART | PHD_3 | 197 | 245 | IPR001965 | - | |
Lac6g3087 | 251 | Pfam | Alfin | 11 | 138 | IPR021998 | GO:0006355(InterPro)|GO:0042393(InterPro) | |
Lac6g3087 | 251 | PANTHER | CPG BINDING PROTEIN | 7 | 250 | IPR045104 | GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro) | |
Lac6g3087 | 251 | ProSitePatterns | Zinc finger PHD-type signature. | 198 | 244 | IPR019786 | - | |
Lac6g3087 | 251 | MobiDBLite | consensus disorder prediction | 146 | 170 | - | - | |
Lac6g3087 | 251 | SUPERFAMILY | FYVE/PHD zinc finger | 187 | 248 | IPR011011 | - | |
Lac6g3087 | 251 | MobiDBLite | consensus disorder prediction | 146 | 191 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g3221 | Lac-Chr10:46329410 | Lac6g3087 | Lac-Chr6:48395336 | 1.10E-85 | dispersed | |
Lac13g1118 | Lac-Chr13:9718867 | Lac6g3087 | Lac-Chr6:48395336 | 1.70E-46 | dispersed | |
Lac6g0152 | Lac-Chr6:1296865 | Lac6g3087 | Lac-Chr6:48395336 | 2.00E-120 | dispersed | |
Lac5g1806 | Lac-Chr5:36012989 | Lac6g3087 | Lac-Chr6:48395336 | 2.00E-98 | transposed | |
Lac4g3002 | Lac-Chr4:48280054 | Lac6g3087 | Lac-Chr6:48395336 | 2.80E-110 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24095 | PF12165 | Alfin | 2.50E-70 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac6g3087 | K26274 | - | rcu:8272513 | 425.631 |