Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g3087 ATGGATGGAGGAGCAGCTTACAATCCTCGGACGGTGGAAGAGGTTTTCAGGGACTTTAAGGGCCGCCGCGCCGGAATGATTAGAGCTCTCACCACCGATGTCGAAGAATTTTATCAGCAGTGCGACCCTGAGAAGGAAAATCTCTGCCTATATGGGTTCCCTAATGAACAGTGGGAAGTTAATTTACCCGCTGAAGAAGTACCACCAGAGCTTCCGGAACCAGCACTGGGCATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTATCCCTTGTTGCCGTTCACAGTGACGCATGGCTGCTTGCTGTGGCTTTCTATTTTGGTGCTAGATTTGGCTTTGATAAATCTGACAGGAAACGCCTTTTTACGATGATAAATGATCTACCCACGATATTTGAGGTTGTGACGGGAAGTGTGAAGAAACAGGGAAAAGACAAGTCATTAGTTTCAAATAACAGCAGCAACAAATCCAAGACAGGCTCAAAAGGGCGAGGATCTGAATCAAGCAAATTGTCCAAGGGGTTGGCAAAAGAAGAGGATGAGGGACTGGATGAGGACGATGAGGAGGAGCACGGGGAGACCTTATGTGGGGCATGCGGGGAGAATTATGCATCAGACGAGTTCTGGATATGTTGCGACATATGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCAAGGGCCGAACATATCAAGCAATACAAATGCCCCTCGTGCAGCAATAAGAGAGCACGGCCCTGA 756 48.02 MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTDVEEFYQQCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKSDRKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKTGSKGRGSESSKLSKGLAKEEDEGLDEDDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48395336 48397858 - Lag0007056.1 Lac6g3087 612856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g3087 251 FunFam PHD finger alfin-like protein 189 246 - -
Lac6g3087 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Lac6g3087 251 Pfam PHD-finger 198 244 IPR019787 -
Lac6g3087 251 CDD PHD_AL_plant 197 247 IPR044104 -
Lac6g3087 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Lac6g3087 251 SMART PHD_3 197 245 IPR001965 -
Lac6g3087 251 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Lac6g3087 251 PANTHER CPG BINDING PROTEIN 7 250 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Lac6g3087 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Lac6g3087 251 MobiDBLite consensus disorder prediction 146 170 - -
Lac6g3087 251 SUPERFAMILY FYVE/PHD zinc finger 187 248 IPR011011 -
Lac6g3087 251 MobiDBLite consensus disorder prediction 146 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3221 Lac-Chr10:46329410 Lac6g3087 Lac-Chr6:48395336 1.10E-85 dispersed
Lac13g1118 Lac-Chr13:9718867 Lac6g3087 Lac-Chr6:48395336 1.70E-46 dispersed
Lac6g0152 Lac-Chr6:1296865 Lac6g3087 Lac-Chr6:48395336 2.00E-120 dispersed
Lac5g1806 Lac-Chr5:36012989 Lac6g3087 Lac-Chr6:48395336 2.00E-98 transposed
Lac4g3002 Lac-Chr4:48280054 Lac6g3087 Lac-Chr6:48395336 2.80E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24095 PF12165 Alfin 2.50E-70 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g3087 K26274 - rcu:8272513 425.631