Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g3094 ATGCCGGTGCATCTCACGCCGAATGCAATCTCTGCAATTGTCGCTGGTGACGTTAATTCCAAGCCCCTGGTGCAGGTCCTAGATATCAAGCTGATCGGCAACGCGCAGGAGAGATATAGCCTCTTGATCTCCGATGCCGTTTCTGCTGAGCAGGCTATGCTCGCAACTCAGCTTAATGATATTATTAAGACTGGACGAGTCAAGAAAGGATCCGTCATCCAGTTGATCGATTACGTTTGCAGTCCCATCAAGGGCCGCAAGATTATTGTTGTGCTCAGCCTGGAAACTATTATATTGGACTGTGAGATAATTGGGAATCCAAAATCATCCGCTCAATCAGAATCTTTTGCACAGAAGGCAATGCCATCTGGAAATTTAGAGCAACCTGCCAAGGTTGGTAATGGTCTTCTGAGTTCCAGAAATCCAGTTCATAATGTGCAGAGCTTCCAAGCTACAGTTCAACCTCCATATCAGCCACCTCCGAATTATAAAAATCATGGTGCAATAATTAAGAACGAGGCACCAGCTCGTATAATTCCCATAGCTGCATTGAATCCTTATCAGGGACGATGGGCTATAAAGGCAAGAGTTACTGCTAAGGGTGATCTCCGTCGCTATAATAATGCCAAAGGAGATGGAAAAGTTTTCTCTTTTGACCTCCTTGATTCTGATGGAGGAGAGATACGTGTAACCTGCTTCAATGCTGTTGTTGATCGCTTCTACGAGGTCATAGAAGTTGGTAAAGTCTACTTGATTTCTAAAGGTAGCCTAAAACCTGCTCGAAAGGATTTCAATCACCTAAAGAATGAATGGGAGGTTTTCTTGGAGGCTTCTTCCACTGTGGAACTCTGTCCAGATGAAGATAATACCATTCCAAGACAGCAGTTTTCTTTCAGACCTATCAGTGAAATTGAGAGTGCTGAAACCAACTCTATTCTGGATGTTATTGGTATTGTAACATCCATCAATCCATCAATTCCTGTGTTGAGGAAAAATGGTATGGAAACTCAAAGAAGAGTTCTGAATTTGAAGGATTCATCTGGCAGGAGTGTTGAGCTGACACTGTGGGGGGATTTTTGCAACAAAGAAGGTCAAAAACTGCAAGAAATAATTAACTCGGGCCTCTCTCCAGTTTTAGCTGTGAAATCTGGCAAGGTAAGTGATTTCACTGGGAAATCTATTGGGACAATCTCTTCGACTCAGCTTTTCATAAATCCAGATCTTCCTGAGGCTCACATCTTGAGAGACTGGTACGATGGTGGGGGAAAGAATACTACTTCTCTGTCTATTTCTAAAGAAATTATGCCAGGAGCATCCAAGAATGAGATTCGGAAAACTGTGTCTCAGATTAAAGACGAAGGTCTTGGCCGATCTGATAAACCAGATTGGATTACCGTGAAAGCAACAATATCATTCATCAAAACCGATTCCTTCTGCTACACAGCATGTCCACTAATGATTGGAGATCGACAGTGCAACAAGAAGGTGAACAGATCAGGAAACTCAAAGTGGCTATGTGACAGGTGCAATCAAGAATTTGAAGATTGCGATTACAGATATCTTCTTCAAGCCCAAATCCAAGACCATACCGGATTGACATGGGTGACAGCCTTCCAGGAATCTGGTGAAGAGATTCTGGGTGTTTCAGCCAAGGAGTTGTACATGTTGAAGTATGAAGAGCAGGATGATGTCAAGTTCGGTGAAATACTCAGAAGTAAAATTTTCGATCAATTTCTGTTTAGGCTCAAAATTAAAGAGGAGATGTATGGGGATGAACAGAGGGTGAAAAACACGGTAGTCAAGGCAGATAGGGTAAACCATTCTTCCGAAAGCAAATATATGTTGGATTTGCTTTCAAAATTTTCGAGGTAA 1872 42.36 MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIIKTGRVKKGSVIQLIDYVCSPIKGRKIIVVLSLETIILDCEIIGNPKSSAQSESFAQKAMPSGNLEQPAKVGNGLLSSRNPVHNVQSFQATVQPPYQPPPNYKNHGAIIKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEVIEVGKVYLISKGSLKPARKDFNHLKNEWEVFLEASSTVELCPDEDNTIPRQQFSFRPISEIESAETNSILDVIGIVTSINPSIPVLRKNGMETQRRVLNLKDSSGRSVELTLWGDFCNKEGQKLQEIINSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFINPDLPEAHILRDWYDGGGKNTTSLSISKEIMPGASKNEIRKTVSQIKDEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDRQCNKKVNRSGNSKWLCDRCNQEFEDCDYRYLLQAQIQDHTGLTWVTAFQESGEEILGVSAKELYMLKYEEQDDVKFGEILRSKIFDQFLFRLKIKEEMYGDEQRVKNTVVKADRVNHSSESKYMLDLLSKFSR 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48424725 48428060 - Lag0007063.1 Lac6g3094 612863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g3094 623 Pfam Replication protein A OB domain 301 405 IPR031657 -
Lac6g3094 623 SUPERFAMILY Nucleic acid-binding proteins 295 426 IPR012340 -
Lac6g3094 623 Pfam Replication factor-A C terminal domain 463 614 IPR013955 -
Lac6g3094 623 Pfam OB-fold nucleic acid binding domain 193 263 IPR004365 GO:0003676(InterPro)
Lac6g3094 623 Gene3D - 290 430 IPR012340 -
Lac6g3094 623 PANTHER REPLICATION FACTOR A 1, RFA1 179 600 IPR004591 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER)
Lac6g3094 623 FunFam Replication protein A subunit 177 286 - -
Lac6g3094 623 FunFam Replication protein A subunit 290 428 - -
Lac6g3094 623 Gene3D - 3 111 IPR012340 -
Lac6g3094 623 Pfam Replication factor-A protein 1, N-terminal domain 5 97 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Lac6g3094 623 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
Lac6g3094 623 CDD RPA1_DBD_B 312 419 - -
Lac6g3094 623 NCBIfam replication factor-a protein 1 (rpa1) 4 620 IPR004591 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Lac6g3094 623 Gene3D - 431 622 IPR012340 -
Lac6g3094 623 FunFam Replication protein A subunit 429 621 - -
Lac6g3094 623 SUPERFAMILY Nucleic acid-binding proteins 177 290 IPR012340 -
Lac6g3094 623 SUPERFAMILY Nucleic acid-binding proteins 444 621 IPR012340 -
Lac6g3094 623 Gene3D - 177 287 IPR012340 -
Lac6g3094 623 CDD RPA1_DBD_C 447 620 IPR047192 -
Lac6g3094 623 CDD RPA1N 9 98 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Lac6g3094 623 FunFam Replication protein A subunit 4 111 - -
Lac6g3094 623 CDD RPA1_DBD_A 180 283 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0557 Lac-Chr3:4267892 Lac6g3094 Lac-Chr6:48424725 2.90E-82 dispersed
Lac5g0150 Lac-Chr5:1231616 Lac6g3094 Lac-Chr6:48424725 2.90E-202 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g3094 K07466 - csv:101207583 1182.93