Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g3101 ATGAGCGGAAGAAACAGATTCCCATTTACTGCAGCTCAGTGGCAAGAGCTGGAGCACCAAGCCCTCATCTTCAAGTACATGGTCTCCGGCATCCCTGTCCCTCCCGATCTGCTCTTCACCATTAAGAGAACCTCTTTGGATTCTCCTTTCATTTCCAGGCTCTTTCCCCACCAATATCCAGACGTTGGATGGAACTACTTGCAAATGGGTTCGGGGAGGAAAATCGACCCAGAACCTGGAAGGTGCAGAAGAACAGACGGCAAGAAATGGAGATGCTCCAAAGAGGCATACCCAGATTCTAAGTACTGTGAGAGACATATGCACAGAGGTAAAAATCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACAACAACTACTCTAAACTCTAATCCATCCACCCCAGCCATCTCTTCCATCACCCAGAACTCCACTCTCTCTTCTTCCTCTCATTCCCTTGCTTCACTCACCAACTCATTACCCTCTGAAACTCATAGCCAACACCTCCACCATTCTTGTTTCAATACTCATCCTCCTCACCCTTTTCTCTATCAACATGGCTCTTCTTCAAGACCCCCTGGTTCTGGCCATTTGCAGCAAAACTCCAACACCTCCTTGCTTCTGGACCCAGGTTCTTACTCCCACAACAACCCAGATTACAGAAGAAACAGGTATGTTTATGGGGTGAAGGAAGATGATGAGCATCCCTTTCTATCGGAAGAACACTCTGGCAACATGAGAGGCTTCTCTGCTTCGTCTATGGAAGATTCCTGGCAGCTAACTCCTCTCACAATGAGCTGCTCTTCCTCATCCTCCAGACACAAGAACTGCTCTGCTTTACAAGGTGACTACTCTTCTTACTTACAGCTTCAGAGCTTTGGCGATTCCCCTAAGCAACTCAAGCAAGAGGACCATTACTACGCGCTGGGAAAATACAATGAGATGCAGAGTAAGATGGAAAGAGATGAACCACAGAAGACTATGCATCACTTCTTTGATGAATGGTCTCCAAAAGACAGAGAATCGTGGCTTGATTTGGATGATAAGTCATCGAATACCGGCTCAGTTTCTGCAACTCGGCTTTCAATGTCTATTCCTAACTCATCACAACATGACTTCTCCTCCATCTTCAGTTCCAACAAGCATAATGAAAGCTGA 1158 46.11 MSGRNRFPFTAAQWQELEHQALIFKYMVSGIPVPPDLLFTIKRTSLDSPFISRLFPHQYPDVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTTTTLNSNPSTPAISSITQNSTLSSSSHSLASLTNSLPSETHSQHLHHSCFNTHPPHPFLYQHGSSSRPPGSGHLQQNSNTSLLLDPGSYSHNNPDYRRNRYVYGVKEDDEHPFLSEEHSGNMRGFSASSMEDSWQLTPLTMSCSSSSSRHKNCSALQGDYSSYLQLQSFGDSPKQLKQEDHYYALGKYNEMQSKMERDEPQKTMHHFFDEWSPKDRESWLDLDDKSSNTGSVSATRLSMSIPNSSQHDFSSIFSSNKHNES 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48463371 48464708 - Lag0007070.1 Lac6g3101 612870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g3101 385 Pfam WRC 77 119 IPR014977 -
Lac6g3101 385 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac6g3101 385 PANTHER GROWTH-REGULATING FACTOR 5 3 369 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Lac6g3101 385 MobiDBLite consensus disorder prediction 151 173 - -
Lac6g3101 385 Pfam QLQ 8 41 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac6g3101 385 MobiDBLite consensus disorder prediction 343 385 - -
Lac6g3101 385 MobiDBLite consensus disorder prediction 188 219 - -
Lac6g3101 385 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Lac6g3101 385 MobiDBLite consensus disorder prediction 151 219 - -
Lac6g3101 385 MobiDBLite consensus disorder prediction 348 385 - -
Lac6g3101 385 SMART QLQ_2 7 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g3101 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2895 Lac-Chr10:43538595 Lac6g3101 Lac-Chr6:48463371 6.20E-28 dispersed
Lac6g0229 Lac-Chr6:1827428 Lac6g3101 Lac-Chr6:48463371 6.40E-32 dispersed
Lac6g3101 Lac-Chr6:48463371 Lac7g0308 Lac-Chr7:2366656 1.00E-24 dispersed
Lac12g2484 Lac-Chr12:41899517 Lac6g3101 Lac-Chr6:48463371 1.90E-54 transposed
Lac9g1392 Lac-Chr9:31576486 Lac6g3101 Lac-Chr6:48463371 7.90E-37 transposed
Lac3g1074 Lac-Chr3:8806355 Lac6g3101 Lac-Chr6:48463371 2.50E-109 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac10g2895 . 1 309 GRF Transcription Factor Family AT2G36400 52.6 2.0e-60 230.7
Lac10g2895 . 1 302 GRF Transcription Factor Family AT3G52910 53.8 8.8e-58 221.9
Lac12g2484 . 11 349 GRF Transcription Factor Family AT3G13960 50.9 2.2e-51 200.7
Lac6g3101 . 2 110 GRF Transcription Factor Family AT3G13960 73.0 3.8e-43 173.3
Lac3g1074 . 8 110 GRF Transcription Factor Family AT3G13960 72.8 9.3e-42 168.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002565 3 3 1 2 3 1 4 1 1 1 2 1 4 1 2 3 1 1 3 1 2 2 2 2 2 1 2 3 2 1 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24097 PF08879 WRC 8.20E-21 No_clan Lac TF