Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g3101 ATGAGCGGAAGAAACAGATTCCCATTTACTGCAGCTCAGTGGCAAGAGCTGGAGCACCAAGCCCTCATCTTCAAGTACATGGTCTCCGGCATCCCTGTCCCTCCCGATCTGCTCTTCACCATTAAGAGAACCTCTTTGGATTCTCCTTTCATTTCCAGGCTCTTTCCCCACCAATATCCAGACGTTGGATGGAACTACTTGCAAATGGGTTCGGGGAGGAAAATCGACCCAGAACCTGGAAGGTGCAGAAGAACAGACGGCAAGAAATGGAGATGCTCCAAAGAGGCATACCCAGATTCTAAGTACTGTGAGAGACATATGCACAGAGGTAAAAATCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACAACAACTACTCTAAACTCTAATCCATCCACCCCAGCCATCTCTTCCATCACCCAGAACTCCACTCTCTCTTCTTCCTCTCATTCCCTTGCTTCACTCACCAACTCATTACCCTCTGAAACTCATAGCCAACACCTCCACCATTCTTGTTTCAATACTCATCCTCCTCACCCTTTTCTCTATCAACATGGCTCTTCTTCAAGACCCCCTGGTTCTGGCCATTTGCAGCAAAACTCCAACACCTCCTTGCTTCTGGACCCAGGTTCTTACTCCCACAACAACCCAGATTACAGAAGAAACAGGTATGTTTATGGGGTGAAGGAAGATGATGAGCATCCCTTTCTATCGGAAGAACACTCTGGCAACATGAGAGGCTTCTCTGCTTCGTCTATGGAAGATTCCTGGCAGCTAACTCCTCTCACAATGAGCTGCTCTTCCTCATCCTCCAGACACAAGAACTGCTCTGCTTTACAAGGTGACTACTCTTCTTACTTACAGCTTCAGAGCTTTGGCGATTCCCCTAAGCAACTCAAGCAAGAGGACCATTACTACGCGCTGGGAAAATACAATGAGATGCAGAGTAAGATGGAAAGAGATGAACCACAGAAGACTATGCATCACTTCTTTGATGAATGGTCTCCAAAAGACAGAGAATCGTGGCTTGATTTGGATGATAAGTCATCGAATACCGGCTCAGTTTCTGCAACTCGGCTTTCAATGTCTATTCCTAACTCATCACAACATGACTTCTCCTCCATCTTCAGTTCCAACAAGCATAATGAAAGCTGA 1158 46.11 MSGRNRFPFTAAQWQELEHQALIFKYMVSGIPVPPDLLFTIKRTSLDSPFISRLFPHQYPDVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTTTTLNSNPSTPAISSITQNSTLSSSSHSLASLTNSLPSETHSQHLHHSCFNTHPPHPFLYQHGSSSRPPGSGHLQQNSNTSLLLDPGSYSHNNPDYRRNRYVYGVKEDDEHPFLSEEHSGNMRGFSASSMEDSWQLTPLTMSCSSSSSRHKNCSALQGDYSSYLQLQSFGDSPKQLKQEDHYYALGKYNEMQSKMERDEPQKTMHHFFDEWSPKDRESWLDLDDKSSNTGSVSATRLSMSIPNSSQHDFSSIFSSNKHNES 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48463371 48464708 - Lag0007070.1 Lac6g3101 612870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g3101 385 Pfam WRC 77 119 IPR014977 -
Lac6g3101 385 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac6g3101 385 PANTHER GROWTH-REGULATING FACTOR 5 3 369 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Lac6g3101 385 MobiDBLite consensus disorder prediction 151 173 - -
Lac6g3101 385 Pfam QLQ 8 41 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac6g3101 385 MobiDBLite consensus disorder prediction 343 385 - -
Lac6g3101 385 MobiDBLite consensus disorder prediction 188 219 - -
Lac6g3101 385 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Lac6g3101 385 MobiDBLite consensus disorder prediction 151 219 - -
Lac6g3101 385 MobiDBLite consensus disorder prediction 348 385 - -
Lac6g3101 385 SMART QLQ_2 7 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2895 Lac-Chr10:43538595 Lac6g3101 Lac-Chr6:48463371 6.20E-28 dispersed
Lac6g0229 Lac-Chr6:1827428 Lac6g3101 Lac-Chr6:48463371 6.40E-32 dispersed
Lac6g3101 Lac-Chr6:48463371 Lac7g0308 Lac-Chr7:2366656 1.00E-24 dispersed
Lac12g2484 Lac-Chr12:41899517 Lac6g3101 Lac-Chr6:48463371 1.90E-54 transposed
Lac9g1392 Lac-Chr9:31576486 Lac6g3101 Lac-Chr6:48463371 7.90E-37 transposed
Lac3g1074 Lac-Chr3:8806355 Lac6g3101 Lac-Chr6:48463371 2.50E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24097 PF08879 WRC 8.20E-21 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g3101 - - - 0.0