Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g3114 ATGTCAACGCAACTGTCCATCGCTCCTATTCTTAGAAGCAGGTGTAATTCTGGGAATGATCTATTTTCGAACGCCAACAATGACACAACTTCCTTCATTCCCAATTACAACGAACCGGAAAAAAAGCTTTGCCCAACACACTCGCAGACAACCACGCAATTCTTCGAACAGCGGCTGGTTTCTATCCGGAGCTATTCCATTTTCCGTTCCGGCTCTGCAATGGCCGCTGTTCGAATTGTCTTCCTCTTCCTGATCTTCCTTCTTGGCGGTCTACCTCTCTCCTGTTCCCTCACCGAGAACGAGGCCCTCCTCAAGCTCAAGCAATCCTTCACCCACTCCGAATCCCTCAATTCCTGGACCCCCGACTCCGTCCCCTGCTCCGCTCGATGGACCGGCATCATCTGTAACAGGGGCGTCATCACCGGCCTCCATCTCACGGGCCTCCAACTCTCCGGCAAGATCGACGTCGAAGCTCTCCTCGAGCTGCGCGGCCTTCGCACCATCAGCTTCGTGAACAACAGCTTCTCCGGGCCCATCCCGGAGTTGAACAGAATCGGCGTTCTCAAGTCCCTCCTCCTCTCTGGGAACGACTTCTCTGGGGTCATCCCAAACGACTTCTTTTCATCCCTGACGTCCCTCAAGAAGGTCTGGCTCTCCTTCAACAAGTTCTCCGGGAACATTCCACACTCTCTGGGACAACTCACCCATCTGATCGAACTCCACCTGGAAAACAACCAATTCTCGGGGCCCATCCCCCACCTGAATCAGGCCACCATAGCCTCCCTCGACTTCTCCAACAACAAGCTAGAGGGAGAGATCCCGGAGAGCCTATCCAGATTCGACGCAAAGGCATTTGCCGGTAACGAGGCCCTGTGCGGGAAACCGCTCCCCAAATCATGCGACGACAACGCGCGGATTTCCGAGGAAAAGCCCCCTCCGTCTCCCCCCGGGGAGTCCCAAGGCAACGTCTCCAAGCTAGTAGTGGCCTCGTTGATAGCGGTGGTCGTGTTTCTGATGGTCTTCATATTTCTGAGCGCCTCGAAGCGGAGAGAGGACGAGTTCAGCGTGCTGGGGAGGGAGCACATGGAGGAGGTGGTGGAGGTGCACGTGCCGCATGATAAGGGGGGCAGGGAGCAGTCGAGCAGGAGAGGTGGGGACTCCAGGAGAGGGTCGCAACAGGGGAAGGGGGCGATGAGCGATCTGGTGGTAGTGAATGATGACAAGGGTACGTTCGGGTTGGCGGATTTGATGAAGGCCGCGGCGGAGGTGCTGGGGAATGGTGGCTTAGGCTCCGCCTACAAGGCGGTGATGGCCAACGGGCTGTCGGTGGTGGTGAAGAGAATGAGAGAAATGAACAAACTGGGGAAGGATGGGTTCGATGCAGAGATGAGGCGGCTGGGAAAGCTGCGCCATCATAACATACTCACGCCTTTGGCCTACCACTACAGGAGAGAGGAGAAGCTGCTGGTGTCGGAGTACATTCCAAAGGGCAGCCTCTTGTATGTGTTGCATGGTGACCGTGGAGCCTGCCATGCGGAGCTTAACTGGGGCATCCGGTTAAGGATTGTGAAGGGGATCGGCAGGGGTATGGGGTTCCTCCATTCCGAATTCGCAACCTACGATGTTCCGCATGGCAATCTGAAATCCAGCAACGTTCTTCTAAGCGACAACTACGAGCCCCTCCTCAGCGACTACGCCTTTTATCCGCTAATCAATCCCAACAATGCCACGCAGGCGATGTTTGCGTACAGATCCCCTGAGTACACCCAATACCAAGAACTTTCCCCCAAGTCTGACGTTTACTGCCTTGGAATTATCATTCTCGAAATTATGACCAGCAAATTCCCTTCTCAATATCTTACCAATGGCAAGGGCGGTACCGATGTGGTGCAGTGGGTCTCCTCCGCAGTTTCCGAGAAGAGGGAGGCCGAACTCATCGACCCTGAGATTGCAAACGACACCGGTGCACTCGATCGCATGGTCCAACTCCTCAGAATCGGCGCCGATTGCACTCTCAGCAATCCTCAGCAACGGCCAGAAATGAGGGAAGCCATTAGGAGAATAGAAGAGATATGA 2076 55.11 MSTQLSIAPILRSRCNSGNDLFSNANNDTTSFIPNYNEPEKKLCPTHSQTTTQFFEQRLVSIRSYSIFRSGSAMAAVRIVFLFLIFLLGGLPLSCSLTENEALLKLKQSFTHSESLNSWTPDSVPCSARWTGIICNRGVITGLHLTGLQLSGKIDVEALLELRGLRTISFVNNSFSGPIPELNRIGVLKSLLLSGNDFSGVIPNDFFSSLTSLKKVWLSFNKFSGNIPHSLGQLTHLIELHLENNQFSGPIPHLNQATIASLDFSNNKLEGEIPESLSRFDAKAFAGNEALCGKPLPKSCDDNARISEEKPPPSPPGESQGNVSKLVVASLIAVVVFLMVFIFLSASKRREDEFSVLGREHMEEVVEVHVPHDKGGREQSSRRGGDSRRGSQQGKGAMSDLVVVNDDKGTFGLADLMKAAAEVLGNGGLGSAYKAVMANGLSVVVKRMREMNKLGKDGFDAEMRRLGKLRHHNILTPLAYHYRREEKLLVSEYIPKGSLLYVLHGDRGACHAELNWGIRLRIVKGIGRGMGFLHSEFATYDVPHGNLKSSNVLLSDNYEPLLSDYAFYPLINPNNATQAMFAYRSPEYTQYQELSPKSDVYCLGIIILEIMTSKFPSQYLTNGKGGTDVVQWVSSAVSEKREAELIDPEIANDTGALDRMVQLLRIGADCTLSNPQQRPEMREAIRRIEEI 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48530513 48532712 - Lag0007083.1 Lac6g3114 612883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g3114 691 Pfam Leucine rich repeat N-terminal domain 99 136 IPR013210 -
Lac6g3114 691 FunFam Nuclear pore complex protein NUP107 96 253 - -
Lac6g3114 691 Gene3D Transferase(Phosphotransferase) domain 1 494 691 - -
Lac6g3114 691 Pfam Leucine Rich Repeat 212 234 IPR001611 GO:0005515(InterPro)
Lac6g3114 691 Pfam Leucine Rich Repeat 261 279 IPR001611 GO:0005515(InterPro)
Lac6g3114 691 Pfam Leucine Rich Repeat 188 207 IPR001611 GO:0005515(InterPro)
Lac6g3114 691 SUPERFAMILY Protein kinase-like (PK-like) 422 687 IPR011009 -
Lac6g3114 691 Gene3D Phosphorylase Kinase; domain 1 386 493 - -
Lac6g3114 691 SUPERFAMILY L domain-like 94 279 - -
Lac6g3114 691 Pfam Protein kinase domain 422 685 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g3114 691 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 98 691 IPR046959 -
Lac6g3114 691 Gene3D Ribonuclease Inhibitor 207 257 IPR032675 -
Lac6g3114 691 Gene3D Ribonuclease Inhibitor 98 206 IPR032675 -
Lac6g3114 691 ProSiteProfiles Protein kinase domain profile. 418 691 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g3114 691 Gene3D Ribonuclease Inhibitor 258 303 IPR032675 -
Lac6g3114 691 MobiDBLite consensus disorder prediction 367 398 - -
Lac6g3114 691 MobiDBLite consensus disorder prediction 302 321 - -
Lac6g3114 691 MobiDBLite consensus disorder prediction 367 389 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g1160 Lac-Chr6:11031548 Lac6g3114 Lac-Chr6:48530513 2.30E-65 dispersed
Lac6g3114 Lac-Chr6:48530513 Lac8g1972 Lac-Chr8:38157274 7.20E-58 dispersed
Lac6g3114 Lac-Chr6:48530513 Lac3g0397 Lac-Chr3:2989084 2.40E-101 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86300 PF00069 Pkinase 2.70E-26 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g3114 K28077 - csv:101215919 1023.46